Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   ABI424_RS03855 Genome accession   NZ_CP157211
Coordinates   849541..850068 (-) Length   175 a.a.
NCBI ID   WP_011608418.1    Uniprot ID   A0A9Q6P3A6
Organism   Histophilus somni strain 23-038383_S91     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 844541..855068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI424_RS03840 (ABI424_000770) - 847834..848151 (-) 318 WP_012340547.1 DUF5374 domain-containing protein -
  ABI424_RS03845 (ABI424_000771) - 848132..848812 (-) 681 WP_011608420.1 DUF2572 family protein -
  ABI424_RS03850 (ABI424_000772) - 848815..849492 (-) 678 WP_080514398.1 type II secretion system protein J -
  ABI424_RS03855 (ABI424_000773) comN 849541..850068 (-) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ABI424_RS03875 (ABI424_000777) pal 850743..851198 (-) 456 WP_012340512.1 peptidoglycan-associated lipoprotein Pal -
  ABI424_RS03880 (ABI424_000778) tolB 851208..852512 (-) 1305 WP_012340504.1 Tol-Pal system beta propeller repeat protein TolB -
  ABI424_RS03885 (ABI424_000779) tolA 852540..853595 (-) 1056 WP_012340495.1 cell envelope integrity protein TolA -
  ABI424_RS03890 (ABI424_000780) tolR 853614..854036 (-) 423 WP_011608414.1 colicin uptake protein TolR -
  ABI424_RS03895 (ABI424_000781) tolQ 854104..854787 (-) 684 WP_012340477.1 protein TolQ -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 20468.96 Da        Isoelectric Point: 9.6079

>NTDB_id=1004675 ABI424_RS03855 WP_011608418.1 849541..850068(-) (comN) [Histophilus somni strain 23-038383_S91]
MKALKGFTLLEILIVLLIISMTVTFSFPMWQTANTKMILEKEQNKLYIFIRELQARVENSNDIWFLIANRDLVSKRWCLV
AQPKNTDICDCLNPRSCNRNIPMKFYYPYFADKTMLISKVYYPREMTRLNGTRNTSTTTCFVLQSDQQRTVFSFFNVGSL
KLKGYQSLSACVNDH

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1004675 ABI424_RS03855 WP_011608418.1 849541..850068(-) (comN) [Histophilus somni strain 23-038383_S91]
ATGAAAGCATTAAAGGGGTTTACTCTATTAGAAATATTGATTGTTTTACTGATTATCAGTATGACAGTAACATTTTCTTT
TCCCATGTGGCAAACAGCAAATACAAAAATGATTTTAGAAAAAGAGCAAAATAAACTCTATATTTTCATAAGGGAGCTAC
AAGCTCGAGTTGAAAATTCTAATGATATTTGGTTTTTAATTGCTAATCGTGATTTAGTGAGTAAGCGTTGGTGCCTGGTT
GCACAACCAAAAAACACAGATATATGTGATTGTTTAAATCCTCGCAGCTGTAATAGAAATATTCCGATGAAATTTTATTA
TCCTTATTTTGCAGATAAAACCATGTTAATCAGCAAAGTTTATTATCCTAGAGAAATGACTAGATTAAATGGTACAAGGA
ATACAAGTACGACGACTTGTTTTGTGTTGCAATCTGATCAGCAAAGAACAGTATTTTCGTTTTTTAATGTAGGATCTTTA
AAACTTAAAGGTTACCAATCGTTAAGTGCTTGCGTGAATGATCATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

53.293

95.429

0.509

Multiple sequence alignment