Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ABI122_RS19175 Genome accession   NZ_CP157205
Coordinates   3769301..3770080 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis strain 9.1     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3739746..3800078 3769301..3770080 within 0


Gene organization within MGE regions


Location: 3739746..3800078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI122_RS19040 (ABI122_19040) - 3739788..3741335 (+) 1548 WP_130055431.1 recombinase family protein -
  ABI122_RS19045 (ABI122_19045) dpaB 3741368..3741793 (-) 426 Protein_3689 dipicolinate synthase subunit B -
  ABI122_RS19050 (ABI122_19050) dpaA 3741790..3742692 (-) 903 WP_000954735.1 dipicolinic acid synthetase subunit A -
  ABI122_RS19055 (ABI122_19055) - 3742863..3743114 (-) 252 WP_001239759.1 YlmC/YmxH family sporulation protein -
  ABI122_RS19060 (ABI122_19060) - 3743247..3744488 (-) 1242 WP_000592986.1 pitrilysin family protein -
  ABI122_RS19065 (ABI122_19065) - 3744576..3745475 (-) 900 WP_000868227.1 polysaccharide deacetylase family protein -
  ABI122_RS19070 (ABI122_19070) pnp 3745629..3747767 (-) 2139 WP_000076737.1 polyribonucleotide nucleotidyltransferase -
  ABI122_RS19075 (ABI122_19075) rpsO 3747928..3748197 (-) 270 WP_001229392.1 30S ribosomal protein S15 -
  ABI122_RS19080 (ABI122_19080) ribF 3748298..3749269 (-) 972 WP_000766706.1 bifunctional riboflavin kinase/FAD synthetase -
  ABI122_RS19085 (ABI122_19085) truB 3749313..3750236 (-) 924 WP_000399352.1 tRNA pseudouridine(55) synthase TruB -
  ABI122_RS19090 (ABI122_19090) rbfA 3750323..3750679 (-) 357 WP_000776437.1 30S ribosome-binding factor RbfA -
  ABI122_RS19095 (ABI122_19095) - 3750695..3750976 (-) 282 WP_000582363.1 DUF503 family protein -
  ABI122_RS19100 (ABI122_19100) infB 3750973..3753033 (-) 2061 WP_000036343.1 translation initiation factor IF-2 -
  ABI122_RS19105 (ABI122_19105) - 3753038..3753349 (-) 312 WP_001286523.1 YlxQ family RNA-binding protein -
  ABI122_RS19110 (ABI122_19110) - 3753350..3753622 (-) 273 WP_000071127.1 YlxR family protein -
  ABI122_RS19115 (ABI122_19115) nusA 3753634..3754740 (-) 1107 WP_000102604.1 transcription termination factor NusA -
  ABI122_RS19120 (ABI122_19120) rimP 3754758..3755228 (-) 471 WP_000359096.1 ribosome maturation factor RimP -
  ABI122_RS19125 (ABI122_19125) - 3755565..3759866 (-) 4302 WP_000060005.1 PolC-type DNA polymerase III -
  ABI122_RS19130 (ABI122_19130) - 3759991..3761691 (-) 1701 WP_000814300.1 proline--tRNA ligase -
  ABI122_RS19135 (ABI122_19135) rseP 3761801..3763057 (-) 1257 WP_001090243.1 RIP metalloprotease RseP -
  ABI122_RS19140 (ABI122_19140) dxr 3763075..3764217 (-) 1143 WP_000790373.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ABI122_RS19145 (ABI122_19145) cdsA 3764241..3765032 (-) 792 WP_000813592.1 phosphatidate cytidylyltransferase -
  ABI122_RS19150 (ABI122_19150) uppS 3765050..3765826 (-) 777 WP_000971296.1 isoprenyl transferase -
  ABI122_RS19155 (ABI122_19155) frr 3765912..3766469 (-) 558 WP_000531501.1 ribosome recycling factor -
  ABI122_RS19160 (ABI122_19160) pyrH 3766472..3767194 (-) 723 WP_000042668.1 UMP kinase -
  ABI122_RS19165 (ABI122_19165) tsf 3767261..3768148 (-) 888 WP_001018578.1 translation elongation factor Ts -
  ABI122_RS19170 (ABI122_19170) rpsB 3768252..3768953 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  ABI122_RS19175 (ABI122_19175) codY 3769301..3770080 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ABI122_RS19180 (ABI122_19180) hslU 3770158..3771549 (-) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  ABI122_RS19185 (ABI122_19185) hslV 3771572..3772114 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  ABI122_RS19190 (ABI122_19190) xerC 3772157..3773056 (-) 900 WP_001101243.1 tyrosine recombinase XerC -
  ABI122_RS19195 (ABI122_19195) trmFO 3773122..3774426 (-) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ABI122_RS19200 (ABI122_19200) topA 3774475..3776553 (-) 2079 WP_001286963.1 type I DNA topoisomerase -
  ABI122_RS19205 (ABI122_19205) dprA 3776698..3777567 (-) 870 WP_000818059.1 DNA-processing protein DprA -
  ABI122_RS19210 (ABI122_19210) sucD 3777656..3778558 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  ABI122_RS19215 (ABI122_19215) sucC 3778578..3779738 (-) 1161 WP_001020791.1 ADP-forming succinate--CoA ligase subunit beta -
  ABI122_RS19220 (ABI122_19220) - 3779933..3780706 (-) 774 WP_001194265.1 ribonuclease HII -
  ABI122_RS19225 (ABI122_19225) ylqF 3780763..3781653 (-) 891 WP_000236704.1 ribosome biogenesis GTPase YlqF -
  ABI122_RS19230 (ABI122_19230) lepB 3781674..3782225 (-) 552 WP_000711853.1 signal peptidase I -
  ABI122_RS19235 (ABI122_19235) rplS 3782327..3782671 (-) 345 WP_001186516.1 50S ribosomal protein L19 -
  ABI122_RS19240 (ABI122_19240) trmD 3782818..3783552 (-) 735 WP_000686903.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABI122_RS19245 (ABI122_19245) rimM 3783552..3784067 (-) 516 WP_000170278.1 ribosome maturation factor RimM -
  ABI122_RS19250 (ABI122_19250) - 3784189..3784416 (-) 228 WP_000737401.1 KH domain-containing protein -
  ABI122_RS19255 (ABI122_19255) rpsP 3784431..3784703 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  ABI122_RS19260 (ABI122_19260) ffh 3784805..3786154 (-) 1350 WP_000863460.1 signal recognition particle protein -
  ABI122_RS19265 (ABI122_19265) - 3786167..3786499 (-) 333 WP_000891062.1 putative DNA-binding protein -
  ABI122_RS19270 (ABI122_19270) ftsY 3786633..3787622 (-) 990 WP_000007655.1 signal recognition particle-docking protein FtsY -
  ABI122_RS19275 (ABI122_19275) smc 3787638..3791207 (-) 3570 WP_000478973.1 chromosome segregation protein SMC -
  ABI122_RS19280 (ABI122_19280) rncS 3791354..3792091 (-) 738 WP_001146875.1 ribonuclease III -
  ABI122_RS19285 (ABI122_19285) acpP 3792150..3792383 (-) 234 WP_000786062.1 acyl carrier protein -
  ABI122_RS19290 (ABI122_19290) fabG 3792453..3793193 (-) 741 WP_000911773.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  ABI122_RS19295 (ABI122_19295) fabD 3793193..3794137 (-) 945 WP_000515899.1 ACP S-malonyltransferase -
  ABI122_RS19300 (ABI122_19300) plsX 3794152..3795144 (-) 993 WP_000684100.1 phosphate acyltransferase PlsX -
  ABI122_RS19305 (ABI122_19305) fapR 3795141..3795734 (-) 594 WP_000747348.1 transcription factor FapR -
  ABI122_RS19310 (ABI122_19310) recG 3795823..3797871 (-) 2049 WP_130055430.1 ATP-dependent DNA helicase RecG -
  ABI122_RS19315 (ABI122_19315) - 3798161..3799837 (-) 1677 WP_000027129.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=1004642 ABI122_RS19175 WP_000421290.1 3769301..3770080(-) (codY) [Bacillus thuringiensis strain 9.1]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1004642 ABI122_RS19175 WP_000421290.1 3769301..3770080(-) (codY) [Bacillus thuringiensis strain 9.1]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCGGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment