Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FGK81_RS01955 Genome accession   NZ_LR590466
Coordinates   406310..407092 (+) Length   260 a.a.
NCBI ID   WP_002983278.1    Uniprot ID   A2RCV3
Organism   Streptococcus pyogenes strain NCTC8193     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 401310..412092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK81_RS01935 (NCTC8193_00381) - 401647..402612 (-) 966 WP_002983258.1 asparaginase -
  FGK81_RS01940 (NCTC8193_00382) - 402684..404072 (+) 1389 WP_011888631.1 Cof-type HAD-IIB family hydrolase -
  FGK81_RS01945 (NCTC8193_00383) - 404195..404647 (-) 453 WP_002992571.1 universal stress protein -
  FGK81_RS01950 (NCTC8193_00384) - 404878..406092 (+) 1215 WP_011184883.1 pyridoxal phosphate-dependent aminotransferase -
  FGK81_RS01955 (NCTC8193_00385) codY 406310..407092 (+) 783 WP_002983278.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FGK81_RS01960 (NCTC8193_00386) - 407239..407793 (+) 555 WP_002988559.1 cysteine hydrolase family protein -
  FGK81_RS01970 - 408331..408555 (+) 225 WP_014635660.1 putative PEP-binding protein -
  FGK81_RS01975 (NCTC8193_00387) gatC 408787..409089 (+) 303 WP_002988561.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  FGK81_RS01980 (NCTC8193_00388) gatA 409089..410555 (+) 1467 WP_011888632.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  FGK81_RS01985 (NCTC8193_00389) gatB 410555..411994 (+) 1440 WP_011888633.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28633.76 Da        Isoelectric Point: 4.5611

>NTDB_id=1004620 FGK81_RS01955 WP_002983278.1 406310..407092(+) (codY) [Streptococcus pyogenes strain NCTC8193]
MPNLLEKTRKITSILQRSVDSLETELPYNTMASRLADIIDCNACIINGGGTLLGYAMKYKTNTDRVEEFFEAKQFPDTYV
KAASRVYDTEANLSVENELTIFPVESKDTYPGGLTTIAPIYGGGMRLGSLIIWRNDNEFSDDDLILVEISSTVVGIQLLN
LQTENLEDTIRKQTAVNMAINTLSYSEMKAVAAILGELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFAKLKEF

Nucleotide


Download         Length: 783 bp        

>NTDB_id=1004620 FGK81_RS01955 WP_002983278.1 406310..407092(+) (codY) [Streptococcus pyogenes strain NCTC8193]
ATGCCTAACTTATTAGAAAAAACTCGTAAAATCACATCTATTTTGCAGCGTTCCGTAGATAGCCTAGAAACAGAATTACC
GTATAACACAATGGCATCTCGCCTAGCAGATATCATTGACTGCAATGCTTGTATTATCAATGGCGGCGGCACACTGCTTG
GTTATGCCATGAAATATAAAACTAACACTGATCGTGTTGAGGAATTTTTTGAAGCTAAACAATTTCCAGATACTTATGTA
AAGGCTGCTAGCCGAGTTTACGATACAGAAGCTAACCTTTCTGTCGAAAATGAATTGACTATATTCCCTGTTGAGTCTAA
AGACACTTATCCAGGAGGTCTAACGACTATTGCGCCGATTTATGGTGGAGGGATGCGCCTTGGATCACTCATTATCTGGC
GTAATGACAATGAATTTAGTGATGATGATTTGATCTTGGTTGAGATCTCAAGTACTGTTGTGGGGATTCAACTATTAAAT
CTTCAGACAGAAAACTTAGAAGACACCATCCGTAAACAAACAGCGGTCAACATGGCAATTAATACGCTTTCTTATTCAGA
AATGAAAGCTGTTGCAGCAATTCTTGGAGAGTTAGATGGTAATGAAGGACGATTGACAGCTTCTGTTATTGCTGATCGTA
TTGGTATTACCCGTTCTGTTATTGTCAATGCTCTGCGTAAACTAGAAAGTGCAGGGATTATTGAAAGTCGTTCTCTTGGT
ATGAAAGGGACATACCTCAAAGTTATCAACGAAGGTATTTTTGCTAAATTAAAAGAATTTTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-260)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RCV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

66.148

98.846

0.654
  codY Bacillus subtilis subsp. subtilis str. 168

51.373

98.077

0.504