Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   E0F34_RS08135 Genome accession   NZ_LR536843
Coordinates   1494519..1495790 (+) Length   423 a.a.
NCBI ID   WP_130885242.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1489519..1500790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F34_RS08095 (SAMEA104035599_01536) prmA 1489598..1490548 (-) 951 WP_078170518.1 50S ribosomal protein L11 methyltransferase -
  E0F34_RS08100 (SAMEA104035599_01537) - 1490686..1491114 (-) 429 WP_061649866.1 NUDIX hydrolase -
  E0F34_RS08105 (SAMEA104035599_01538) - 1491095..1492183 (-) 1089 WP_050966590.1 site-2 protease family protein -
  E0F34_RS08110 (SAMEA104035599_01539) - 1492202..1492672 (-) 471 WP_000257097.1 DUF3013 family protein -
  E0F34_RS08115 (SAMEA104035599_01540) - 1492963..1493415 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  E0F34_RS08120 - 1493452..1493631 (-) 180 WP_025169096.1 type II toxin-antitoxin system HicA family toxin -
  E0F34_RS08125 (SAMEA104035599_01541) - 1493768..1494016 (-) 249 WP_000797237.1 hypothetical protein -
  E0F34_RS08130 (SAMEA104035599_01542) - 1494006..1494227 (-) 222 WP_000425689.1 hypothetical protein -
  E0F34_RS08135 (SAMEA104035599_01543) rarA 1494519..1495790 (+) 1272 WP_130885242.1 replication-associated recombination protein A Machinery gene
  E0F34_RS08145 (SAMEA104035599_01546) - 1496338..1497657 (-) 1320 WP_061649864.1 glycoside hydrolase family 32 protein -
  E0F34_RS08150 (SAMEA104035599_01547) - 1497667..1498512 (-) 846 WP_000819519.1 carbohydrate ABC transporter permease -
  E0F34_RS08155 (SAMEA104035599_01548) - 1498514..1499416 (-) 903 WP_000032533.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46979.47 Da        Isoelectric Point: 6.1959

>NTDB_id=1004480 E0F34_RS08135 WP_130885242.1 1494519..1495790(+) (rarA) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDKGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIETGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDHLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=1004480 E0F34_RS08135 WP_130885242.1 1494519..1495790(+) (rarA) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACAAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GACTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTTCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTACGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTAAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCATTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.946

96.69

0.56