Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SA268_RS08345 Genome accession   NZ_CP006630
Coordinates   1692722..1693996 (+) Length   424 a.a.
NCBI ID   WP_038412548.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus SA268     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1687722..1698996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA268_RS08315 (SA268_1578) mnmA 1687924..1689042 (-) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -
  SA268_RS08320 (SA268_1579) - 1689043..1690185 (-) 1143 WP_000409170.1 cysteine desulfurase family protein -
  SA268_RS08325 (SA268_1580) - 1690497..1691510 (+) 1014 WP_000985904.1 LLM class flavin-dependent oxidoreductase -
  SA268_RS08330 (SA268_1581) - 1691747..1691893 (-) 147 WP_000009238.1 SAS049 family protein -
  SA268_RS08335 (SA268_1582) - 1691933..1692115 (-) 183 WP_000752909.1 CsbD family protein -
  SA268_RS08340 (SA268_1583) cymR 1692215..1692637 (-) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  SA268_RS08345 (SA268_1584) rarA 1692722..1693996 (+) 1275 WP_038412548.1 replication-associated recombination protein A Machinery gene
  SA268_RS08350 (SA268_1585) - 1694158..1694931 (-) 774 WP_000682646.1 ThiF family adenylyltransferase -
  SA268_RS08355 - 1694931..1695059 (-) 129 WP_031845039.1 hypothetical protein -
  SA268_RS08360 (SA268_1586) aspS 1695392..1697158 (-) 1767 WP_000044807.1 aspartate--tRNA ligase -
  SA268_RS08365 (SA268_1587) hisS 1697174..1698436 (-) 1263 WP_000590822.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47216.78 Da        Isoelectric Point: 8.3539

>NTDB_id=100444 SA268_RS08345 WP_038412548.1 1692722..1693996(+) (rarA) [Staphylococcus aureus subsp. aureus SA268]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKISGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMAYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=100444 SA268_RS08345 WP_038412548.1 1692722..1693996(+) (rarA) [Staphylococcus aureus subsp. aureus SA268]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATTTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGTCAAGCGTTA
ACTCGTGCAATAGAGGATGAAGAGAATGGTTTAAAAACATATCAACCCAAAATTGATGAAGATGCCATGGCCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAAGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.048

99.057

0.684

Multiple sequence alignment