Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   E0F40_RS07545 Genome accession   NZ_LR216065
Coordinates   1423564..1424352 (-) Length   262 a.a.
NCBI ID   WP_000940730.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1418564..1429352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F40_RS07520 (SAMEA3714487_01435) - 1419551..1420063 (-) 513 WP_001049323.1 adenine phosphoribosyltransferase -
  E0F40_RS07525 (SAMEA3714487_01436) - 1420150..1420908 (-) 759 WP_001287234.1 class I SAM-dependent methyltransferase -
  E0F40_RS11780 - 1421116..1421262 (+) 147 WP_000403100.1 hypothetical protein -
  E0F40_RS07530 (SAMEA3714487_01437) - 1421409..1422539 (-) 1131 WP_000229959.1 ABC transporter ATP-binding protein -
  E0F40_RS07540 (SAMEA3714487_01439) - 1422989..1423564 (-) 576 WP_000158722.1 cysteine hydrolase family protein -
  E0F40_RS07545 (SAMEA3714487_01440) codY 1423564..1424352 (-) 789 WP_000940730.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  E0F40_RS07555 (SAMEA3714487_01441) - 1424616..1426190 (-) 1575 WP_000671113.1 DEAD/DEAH box helicase -
  E0F40_RS07560 (SAMEA3714487_01442) - 1426389..1427615 (-) 1227 WP_000841576.1 OFA family MFS transporter -
  E0F40_RS07565 (SAMEA3714487_01443) - 1427808..1429124 (+) 1317 WP_000958925.1 FAD-containing oxidoreductase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29770.14 Da        Isoelectric Point: 5.4646

>NTDB_id=1004107 E0F40_RS07545 WP_000940730.1 1423564..1424352(-) (codY) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
MAHLLEKTRKITSILKRSEEQLQDELPYNAITRQLADIIHCNACIINSKGRLLGYFMRYKTNTDRVEQFFQTKIFPDDYV
QGANMIYETEANLPVEHDMSIFPIESRDDFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLVLVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLISDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=1004107 E0F40_RS07545 WP_000940730.1 1423564..1424352(-) (codY) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
ATGGCACATTTATTAGAAAAAACTAGAAAAATTACATCAATTTTGAAACGCTCAGAGGAGCAGTTGCAGGATGAGCTCCC
TTACAACGCTATTACGCGTCAGTTAGCGGATATTATTCATTGCAATGCCTGCATTATCAATAGTAAGGGACGTCTGCTTG
GCTATTTTATGCGTTATAAAACAAATACAGATCGCGTAGAGCAATTCTTCCAAACTAAGATTTTCCCAGATGACTACGTT
CAAGGGGCTAATATGATTTACGAAACAGAAGCAAACTTGCCTGTTGAGCATGATATGAGTATTTTCCCTATTGAGAGTAG
AGATGATTTTCCAGATGGCTTGACGACTATTGCACCGATTCATGTATCGGGGATTCGCCTTGGTTCTTTGATTATTTGGC
GTAATGATAAAAAATTCGAAGATGAGGACTTGGTTCTTGTTGAGATTGCCAGTACCGTTGTTGGGATTCAGCTTCTTAAC
TTCCAACGTGAAGAAGATGAGAAAAATATTCGTCGTCGTACTGCTGTCACCATGGCGGTCAATACCCTTTCTTACTCCGA
ACTCCGTGCTGTTTCAGCAATTTTAGGGGAATTAAATGGAAATGAAGGGCAGTTGACTGCGTCAGTGATTGCAGATCGTA
TCGGAATCACTCGCTCTGTGATTGTCAATGCTCTTCGTAAACTTGAGTCTGCGGGGATTATTGAAAGTCGCTCACTTGGA
ATGAAGGGAACCTATCTTAAGGTCTTGATTTCAGATATTTTTGAAGAAGTGAAGAAAAGAGATTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.595

100

0.626
  codY Bacillus subtilis subsp. subtilis str. 168

47.967

93.893

0.45