Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AAEY33_RS19135 Genome accession   NZ_CP157082
Coordinates   3919634..3922036 (-) Length   800 a.a.
NCBI ID   WP_347939948.1    Uniprot ID   -
Organism   Peribacillus simplex strain IMGN11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3914634..3927036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEY33_RS19110 (AAEY33_19105) - 3916094..3917170 (-) 1077 WP_144526652.1 AI-2E family transporter -
  AAEY33_RS19115 (AAEY33_19110) - 3917399..3917614 (-) 216 WP_063233024.1 hypothetical protein -
  AAEY33_RS19120 (AAEY33_19115) - 3917604..3918068 (-) 465 WP_260399622.1 PRC-barrel domain-containing protein -
  AAEY33_RS19125 (AAEY33_19120) - 3918210..3918980 (-) 771 WP_347939945.1 TPM domain-containing protein -
  AAEY33_RS19130 (AAEY33_19125) - 3918980..3919546 (-) 567 WP_347939946.1 LemA family protein -
  AAEY33_RS19135 (AAEY33_19130) recD2 3919634..3922036 (-) 2403 WP_347939948.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AAEY33_RS19140 (AAEY33_19135) - 3922073..3922738 (-) 666 WP_048681430.1 tetratricopeptide repeat protein -
  AAEY33_RS19145 (AAEY33_19140) mnmA 3922861..3923976 (-) 1116 WP_063232954.1 tRNA 2-thiouridine(34) synthase MnmA -
  AAEY33_RS19150 (AAEY33_19145) - 3924006..3925151 (-) 1146 WP_347939949.1 cysteine desulfurase family protein -
  AAEY33_RS19155 (AAEY33_19150) - 3925212..3925631 (-) 420 WP_076365115.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 90455.27 Da        Isoelectric Point: 4.8156

>NTDB_id=1004016 AAEY33_RS19135 WP_347939948.1 3919634..3922036(-) (recD2) [Peribacillus simplex strain IMGN11]
MSQQDSLDLFSEEKMFMKGSHLVTIFHNEENMYSVVRIRVHETNLNYEEKEAVVTGYFPRMHEDEIYIFYGAMKEHPRFG
LQYHVEHFRKDLPQSKEGIVSYLSGDLFKGIGKKTAESIVETLGEKAISKILAQPSLLDDIPKLSGEKAKGLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTITMVQGNPYKLVEDIEGIGFGRADELGHQLGISGSHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKRLLEENKRDRIEFTNISSEIIELTQEGKIVVEDQRIYPPSLFYSEKGIVMNIKRLLAQTE
YEDQFPESEFLLALGELEERLDVSYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMNINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLDGRIVIIDEVSMVDTWLAHQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHEIKKGRLPDDVTKQQEDRSFIRCQTGQIPQ
VIEKVVANARTKGFTAKDIQVLAPMYRGPAGIDALNKMLQEVFNSNVNEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILFAKENTDHVDKVIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLREKLQEVLSEEEMPVVKEEVQQSSYLDILMHADPMIGMENVTPYDFM

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=1004016 AAEY33_RS19135 WP_347939948.1 3919634..3922036(-) (recD2) [Peribacillus simplex strain IMGN11]
TTGAGCCAGCAAGACTCATTGGATTTGTTTTCAGAAGAGAAAATGTTCATGAAAGGAAGTCATTTAGTGACGATCTTTCA
TAATGAAGAAAACATGTACTCGGTTGTAAGAATTCGCGTGCATGAAACGAATCTGAATTATGAAGAGAAGGAAGCGGTCG
TAACAGGTTATTTTCCAAGGATGCATGAGGATGAGATCTATATTTTTTATGGGGCCATGAAGGAACATCCGCGTTTTGGC
CTTCAATACCATGTAGAGCATTTTCGCAAGGATCTCCCTCAATCCAAGGAAGGAATCGTCAGTTATTTATCCGGTGACCT
TTTCAAGGGCATTGGGAAAAAAACAGCTGAAAGCATTGTTGAGACACTGGGTGAAAAGGCAATTTCAAAAATTCTGGCTC
AGCCTTCGCTACTTGATGATATTCCGAAGCTATCCGGGGAAAAGGCAAAGGGACTCTATGATACATTGGTCGAGCATCAA
GGTCTGGAGCAGGTGATGATTGCCCTGAATCAATATGGCTTCGGTCCGCAGCTGTCGATGAAGATCTATCAAATGTATAA
GCAGGATACGATCACGATGGTTCAGGGAAATCCGTATAAGCTCGTTGAGGATATTGAAGGGATTGGTTTTGGACGGGCGG
ATGAGCTTGGGCATCAGCTAGGCATTTCTGGCAGCCATCCCGATCGAATCAAGGCTGCGTGCTTGTATACGCTTGAATCA
CAATGCCTCCAGGACGGAAATATCTACATAGAAGCCGAGCAGCTATTGGAGGCTGTCAAACGTCTGCTGGAGGAAAATAA
ACGGGATCGCATTGAGTTCACGAACATTTCCTCGGAAATAATCGAATTGACGCAAGAGGGGAAAATAGTTGTCGAGGATC
AACGAATTTATCCGCCTTCGCTATTCTATTCGGAAAAGGGAATCGTGATGAACATCAAGAGGCTGCTTGCTCAAACCGAG
TATGAGGATCAGTTCCCGGAATCGGAGTTCTTGCTGGCACTTGGGGAGCTGGAAGAGCGGCTGGATGTATCCTATGCGCC
GGCCCAAAAGGAAGCGATCCAAACAGCCCTGCAATCACCCATGTTAATCTTGACGGGCGGACCTGGTACCGGTAAGACGA
CAGTCATCAAAGGCATCGTTGAGCTATATGCAGAGCTGCATGGTGTATCCATGAATATTAACGATTATAAAAAAGAAGGA
AGCGATCCATTTCCATTCGTACTTGCGGCCCCTACTGGCCGTGCAGCGAAACGCATGGCCGAATCGACTGGGCTCCCAGC
TGTTACGATCCATCGTTTGCTGGGGTGGAACGGGAGTGAAGGCTTTTCCCATGATGAGGATAATCAGCTGGATGGCCGCA
TCGTAATCATCGATGAGGTTTCCATGGTGGATACTTGGCTGGCCCATCAATTGTTTAAAGCTCTGCCGGAAAATGTCCAA
GTGATATTGGTTGGTGATGAAGATCAGCTGCCATCTGTTGGCCCTGGGCAGGTTTTAAAGGATTTGCTTGCATCGAATTG
TGTACCGACTGTCAGTCTGGAACATATTTATCGTCAAGCTGATGGCTCATCGATCATTGAATTGGCCCATGAAATCAAAA
AAGGAAGGCTTCCGGATGATGTCACGAAACAGCAAGAAGATCGTTCGTTCATTCGCTGCCAAACAGGTCAAATCCCCCAA
GTAATCGAGAAAGTGGTTGCCAATGCGAGGACGAAAGGCTTCACGGCCAAGGATATACAGGTGCTGGCTCCCATGTATAG
AGGGCCTGCCGGGATTGATGCCCTGAATAAAATGCTTCAGGAAGTGTTCAATAGCAATGTGAATGAAAAGCGGCGGGAAA
TAAAATTCGGAGATGTGATATACAGAACGGGAGATAAGGTGCTTCAACTGGTGAACCAGCCAGAGGAGGGTGTCTTTAAT
GGCGATATGGGTGAAATCGTGTCCATATTGTTCGCTAAAGAAAATACCGATCATGTCGATAAAGTAATCATATCGTTCGA
AGGCATCGAAGTGACTTACACGAAACAGGACTTGAACCAGATTACACATGCCTATTGCTGCTCCATCCATAAGTCGCAGG
GAAGTGAATTCCCCATTGTCATTTTACCTGTAGTGAAAAGTTATTATCGGATGCTCCGCCGTAATTTATTGTATACGGCG
ATTACCCGCAGTAAAAATTTCTTGATCCTTTGTGGTGAAGAAGATGCATTCCGTTTAGGGATCGAGCGTAATGATGAGAT
GCGCCGGAAAACGACTTTGCGTGAAAAGCTGCAAGAGGTTTTGAGTGAAGAAGAAATGCCGGTGGTAAAGGAAGAGGTAC
AACAATCAAGTTATCTTGATATTCTCATGCATGCTGATCCGATGATCGGGATGGAGAATGTCACGCCATATGATTTTATG
TAG

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-555)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.375

100

0.624

Multiple sequence alignment