Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   E0F31_RS07530 Genome accession   NZ_LR216064
Coordinates   1407131..1407919 (-) Length   262 a.a.
NCBI ID   WP_050095162.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain GPSC13 substr. ST473 isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1402131..1412919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F31_RS07505 (SAMEA3714520_01407) - 1403118..1403630 (-) 513 WP_001049323.1 adenine phosphoribosyltransferase -
  E0F31_RS07510 (SAMEA3714520_01408) - 1403717..1404475 (-) 759 WP_001287234.1 class I SAM-dependent methyltransferase -
  E0F31_RS11240 - 1404683..1404829 (+) 147 WP_000403102.1 hypothetical protein -
  E0F31_RS07515 (SAMEA3714520_01409) - 1404976..1406106 (-) 1131 WP_000229959.1 ABC transporter ATP-binding protein -
  E0F31_RS07525 (SAMEA3714520_01411) - 1406556..1407131 (-) 576 WP_050095159.1 cysteine hydrolase family protein -
  E0F31_RS07530 (SAMEA3714520_01412) codY 1407131..1407919 (-) 789 WP_050095162.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  E0F31_RS07540 (SAMEA3714520_01413) - 1408183..1409757 (-) 1575 WP_000671113.1 DEAD/DEAH box helicase -
  E0F31_RS07545 (SAMEA3714520_01414) - 1409956..1411182 (-) 1227 WP_000841584.1 OFA family MFS transporter -
  E0F31_RS07550 (SAMEA3714520_01415) - 1411375..1412691 (+) 1317 WP_024478058.1 FAD-containing oxidoreductase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29737.11 Da        Isoelectric Point: 5.7293

>NTDB_id=1003989 E0F31_RS07530 WP_050095162.1 1407131..1407919(-) (codY) [Streptococcus pneumoniae strain GPSC13 substr. ST473 isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6]
MAHLLEKTRKITSILKRSEEQLQDELPYNAITRQLADIIHCNACIINSKGHLLGYFMRYKTNTDRVEQFFQTKIFPDDYV
QGANMIYETEANLPVEHDMSIFPVESRDDFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLVLVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGKLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLISDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=1003989 E0F31_RS07530 WP_050095162.1 1407131..1407919(-) (codY) [Streptococcus pneumoniae strain GPSC13 substr. ST473 isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6]
ATGGCACATTTATTAGAAAAAACTAGAAAAATTACATCAATTTTGAAACGCTCAGAGGAGCAGTTGCAGGATGAGCTTCC
TTACAACGCTATTACGCGTCAGTTAGCGGATATTATTCATTGCAATGCCTGCATTATCAATAGTAAGGGACATCTGCTTG
GCTATTTTATGCGTTATAAAACAAATACAGATCGCGTAGAGCAATTCTTCCAAACTAAGATTTTCCCAGATGACTACGTT
CAAGGGGCTAATATGATTTACGAAACAGAAGCAAACTTGCCTGTTGAGCATGATATGAGTATTTTCCCTGTTGAGAGTAG
AGATGATTTTCCAGATGGCTTGACGACTATTGCACCGATTCATGTATCGGGGATTCGCCTTGGTTCTTTGATTATTTGGC
GTAATGATAAAAAATTCGAAGATGAGGACTTGGTTCTTGTTGAGATTGCCAGTACCGTTGTTGGAATTCAGCTTCTTAAC
TTCCAACGTGAAGAAGATGAGAAAAATATTCGTCGTCGTACTGCTGTCACCATGGCGGTCAATACCCTTTCTTACTCCGA
ACTCCGTGCTGTTTCAGCAATTTTAGGGGAATTAAATGGAAATGAAGGGAAGTTGACTGCGTCAGTGATTGCAGATCGTA
TCGGAATCACTCGCTCTGTGATTGTCAATGCTCTTCGTAAACTTGAGTCTGCGGGGATTATTGAAAGTCGCTCACTTGGA
ATGAAGGGAACCTATCTTAAGGTCTTGATTTCAGATATTTTTGAAGAAGTGAAGAAAAGAGATTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.595

100

0.626
  codY Bacillus subtilis subsp. subtilis str. 168

48.374

93.893

0.454