Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   ABGT21_RS12645 Genome accession   NZ_CP156990
Coordinates   2351522..2351905 (-) Length   127 a.a.
NCBI ID   WP_014480254.1    Uniprot ID   -
Organism   Bacillus subtilis strain AR02-06     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2346522..2356905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT21_RS12605 (ABGT21_12605) sinI 2347456..2347629 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  ABGT21_RS12610 (ABGT21_12610) sinR 2347663..2347998 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ABGT21_RS12615 (ABGT21_12615) tasA 2348091..2348876 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  ABGT21_RS12620 (ABGT21_12620) sipW 2348940..2349512 (-) 573 WP_003230181.1 signal peptidase I -
  ABGT21_RS12625 (ABGT21_12625) tapA 2349496..2350257 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  ABGT21_RS12630 (ABGT21_12630) yqzG 2350529..2350855 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  ABGT21_RS12635 (ABGT21_12635) spoIIT 2350897..2351076 (-) 180 WP_014480252.1 YqzE family protein -
  ABGT21_RS12640 (ABGT21_12640) comGG 2351147..2351521 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  ABGT21_RS12645 (ABGT21_12645) comGF 2351522..2351905 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  ABGT21_RS12650 (ABGT21_12650) comGE 2351931..2352278 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  ABGT21_RS12655 (ABGT21_12655) comGD 2352262..2352693 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  ABGT21_RS12660 (ABGT21_12660) comGC 2352683..2352979 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  ABGT21_RS12665 (ABGT21_12665) comGB 2352993..2354030 (-) 1038 WP_031600685.1 comG operon protein ComGB Machinery gene
  ABGT21_RS12670 (ABGT21_12670) comGA 2354017..2355087 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  ABGT21_RS12675 (ABGT21_12675) - 2355299..2355496 (-) 198 WP_014480259.1 CBS domain-containing protein -
  ABGT21_RS12680 (ABGT21_12680) corA 2355498..2356451 (-) 954 WP_014480260.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14329.42 Da        Isoelectric Point: 5.8949

>NTDB_id=1003633 ABGT21_RS12645 WP_014480254.1 2351522..2351905(-) (comGF) [Bacillus subtilis strain AR02-06]
MLISGSLAAIFHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFEIYHSMIRKRVDG
KGHVPILDHITAMKADIENGVVLLKIESEDQKVYQTAFPVYSYLGGG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=1003633 ABGT21_RS12645 WP_014480254.1 2351522..2351905(-) (comGF) [Bacillus subtilis strain AR02-06]
TTGCTCATATCAGGATCGTTAGCTGCGATTTTCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
AGAATGGATGATTTCGATAGAACAGATGATGAATGAATGCAAGGAGTCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGGCAGGACATCCGTTTCGAAATTTATCATTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCGATTTTAGATCATATTACTGCCATGAAAGCTGATATTGAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAGGACCAAAAAGTGTATCAAACTGCTTTTCCAGTCTATTCGTATTTAGGAGGGGGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

98.425

100

0.984

Multiple sequence alignment