Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EL323_RS04530 Genome accession   NZ_LR134526
Coordinates   817890..818507 (+) Length   205 a.a.
NCBI ID   WP_002217147.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC10026     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 812890..823507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL323_RS04515 (NCTC10026_00753) - 814073..815701 (-) 1629 WP_002256644.1 ABC-F family ATPase -
  EL323_RS04520 (NCTC10026_00754) - 815851..816225 (+) 375 WP_002222422.1 arsenate reductase -
  EL323_RS04525 (NCTC10026_00755) - 816285..817823 (+) 1539 WP_014574004.1 SurA N-terminal domain-containing protein -
  EL323_RS04530 (NCTC10026_00756) recR 817890..818507 (+) 618 WP_002217147.1 recombination mediator RecR Machinery gene
  EL323_RS04535 (NCTC10026_00757) - 818593..818871 (-) 279 WP_002220967.1 hypothetical protein -
  EL323_RS04540 (NCTC10026_00758) - 819076..820323 (+) 1248 WP_002217148.1 lipoprotein-releasing ABC transporter permease subunit -
  EL323_RS04545 (NCTC10026_00759) lolD 820316..821011 (+) 696 WP_013448920.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  EL323_RS04550 (NCTC10026_00760) recD 821078..822823 (+) 1746 WP_080542190.1 exodeoxyribonuclease V subunit alpha Machinery gene

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22358.74 Da        Isoelectric Point: 6.2234

>NTDB_id=1003569 EL323_RS04530 WP_002217147.1 817890..818507(+) (recR) [Neisseria meningitidis strain NCTC10026]
MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEKLVDALQTALKQVYHCAMCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNMEAANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=1003569 EL323_RS04530 WP_002217147.1 817890..818507(+) (recR) [Neisseria meningitidis strain NCTC10026]
ATGAGCCACAAAAAACAAGATGCCTTCCAAGGATTGATCGACGCGCTGAAGGTTTTACCCAACGTTGGGCCGAAATCGGC
ACAGCGGATAGCGTATCATTTGCTCCAACACAAGCGCAAAGAGGCTGAAAAACTGGTGGATGCCTTGCAGACGGCATTGA
AGCAGGTTTACCATTGCGCGATGTGCAACACGTTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATGGAAGCGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
GCGGCGGGGAAGTCGAAGAAATCATTATTGCAACCGCTTTTACCGCAGAAGGCAATGCGACGGCGTATGTCCTGTCCGAG
TTTTTTAAAAACCTGCCTTACAAAGTCAGCAGGCTGTCGCAGGGCATTCCCTTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGCCGCCTGATTAAAGAAGGCGGGGCATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.688

97.073

0.366