Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   M744_RS06470 Genome accession   NZ_CP006471
Coordinates   1254454..1255242 (+) Length   262 a.a.
NCBI ID   WP_011244469.1    Uniprot ID   Q31LV4
Organism   Synechococcus elongatus UTEX 2973     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1249454..1260242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M744_RS06445 (M744_06725) arsJ 1249854..1251113 (-) 1260 WP_011244464.1 organoarsenical effux MFS transporter ArsJ -
  M744_RS06450 (M744_06730) - 1251110..1252111 (-) 1002 WP_011378247.1 ArsJ-associated glyceraldehyde-3-phosphate dehydrogenase -
  M744_RS06455 (M744_06735) arsB 1252199..1253260 (+) 1062 WP_011378246.1 ACR3 family arsenite efflux transporter -
  M744_RS06460 (M744_06740) msrA 1253347..1254087 (+) 741 WP_011378245.1 peptide-methionine (S)-S-oxide reductase MsrA -
  M744_RS06465 (M744_06745) - 1254206..1254448 (+) 243 WP_011378244.1 hypothetical protein -
  M744_RS06470 (M744_06750) pilD 1254454..1255242 (+) 789 WP_011244469.1 A24 family peptidase Machinery gene
  M744_RS06475 (M744_06755) dacB 1255484..1256941 (-) 1458 WP_071818121.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  M744_RS06480 (M744_06760) fni 1256839..1257885 (-) 1047 WP_011244471.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  M744_RS06485 (M744_06765) - 1257894..1258427 (-) 534 WP_011244472.1 DUF4330 domain-containing protein -
  M744_RS06490 (M744_06770) - 1258649..1259419 (-) 771 WP_011244473.1 metallophosphoesterase family protein -
  M744_RS06495 (M744_06775) - 1259426..1260169 (-) 744 WP_011244474.1 DUF1995 family protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 28556.30 Da        Isoelectric Point: 9.9455

>NTDB_id=100356 M744_RS06470 WP_011244469.1 1254454..1255242(+) (pilD) [Synechococcus elongatus UTEX 2973]
MFEAVALLFVAVLGAAIGSFLNVVIYRLPLGLSLLHPPSRCPYCRRSLRPQDNLPVVGWLKLRGRCHFCQHRIPARYPIV
EALTAALFVLLAVQFGWSAATLGGWIFFSWLLALSVIDLDTMTLPNVLTASGLAVGVAFQLAIAPATWPVTLFWSLFVAI
AALWLSDLFRWLGEFALRQPVLGGGDSKLLALLGVWLGGPKLLLALFLACLSGAIAGGIGRWRGTLKPMQAMPFGPFLAL
GGAIAWIWGAEWIDLYMRVLLF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=100356 M744_RS06470 WP_011244469.1 1254454..1255242(+) (pilD) [Synechococcus elongatus UTEX 2973]
ATGTTTGAAGCCGTTGCGCTGCTGTTTGTCGCAGTTTTGGGAGCCGCGATCGGGAGCTTTTTAAATGTGGTGATCTACCG
ATTGCCCCTCGGTCTGTCACTGCTGCATCCCCCCTCCCGCTGTCCCTACTGCCGGCGATCGCTGCGGCCGCAAGATAATC
TGCCGGTTGTTGGCTGGCTAAAGCTGCGGGGGCGTTGCCATTTCTGCCAGCATCGGATTCCCGCTCGCTACCCAATTGTT
GAAGCCCTAACTGCTGCTCTGTTCGTCCTGCTGGCGGTGCAGTTTGGCTGGTCTGCGGCCACGCTCGGCGGCTGGATTTT
TTTCTCGTGGTTGCTTGCGCTCAGTGTCATAGACCTCGATACGATGACCCTACCCAATGTCTTGACGGCGTCGGGGCTGG
CGGTGGGTGTGGCTTTTCAGTTGGCGATCGCACCCGCAACCTGGCCCGTGACCCTGTTCTGGTCCTTGTTTGTGGCGATC
GCGGCGCTATGGCTGAGTGATCTATTTCGCTGGCTGGGAGAATTCGCTCTGCGGCAGCCGGTGCTCGGGGGCGGTGACAG
CAAGTTGTTGGCGCTGTTGGGTGTTTGGCTGGGCGGGCCCAAACTCCTTTTGGCACTGTTCCTTGCTTGCCTGAGTGGTG
CAATCGCGGGGGGGATTGGGCGTTGGCGCGGCACCCTCAAACCCATGCAAGCAATGCCTTTTGGCCCATTCCTGGCCTTG
GGTGGGGCGATCGCTTGGATCTGGGGAGCCGAGTGGATTGATCTCTATATGCGAGTTTTGCTCTTTTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(12-95)

Type IV leader peptidase family (Peptidase_A24)

(106-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31LV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

37.276

100

0.397
  pilD Vibrio cholerae strain A1552

36.299

100

0.389