Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   QP021_RS07885 Genome accession   NZ_CP156984
Coordinates   1636102..1637172 (-) Length   356 a.a.
NCBI ID   WP_000776412.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA-675     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1631102..1642172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP021_RS07845 (QP021_007845) gcvPA 1631279..1632625 (-) 1347 WP_000019697.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QP021_RS07850 (QP021_007850) gcvT 1632645..1633736 (-) 1092 WP_285238825.1 glycine cleavage system aminomethyltransferase GcvT -
  QP021_RS07855 (QP021_007855) - 1633895..1634419 (-) 525 WP_001015125.1 shikimate kinase -
  QP021_RS07860 (QP021_007860) - 1634409..1634555 (-) 147 WP_001789879.1 hypothetical protein -
  QP021_RS07865 (QP021_007865) comGF 1634652..1635149 (-) 498 WP_001794328.1 competence type IV pilus minor pilin ComGF Machinery gene
  QP021_RS07870 (QP021_007870) comGE 1635067..1635366 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QP021_RS07875 (QP021_007875) comGD 1635353..1635799 (-) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  QP021_RS07880 (QP021_007880) comGC 1635777..1636088 (-) 312 WP_000472257.1 competence type IV pilus major pilin ComGC Machinery gene
  QP021_RS07885 (QP021_007885) comGB 1636102..1637172 (-) 1071 WP_000776412.1 competence type IV pilus assembly protein ComGB Machinery gene
  QP021_RS07890 (QP021_007890) comGA 1637144..1638118 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QP021_RS07895 (QP021_007895) - 1638170..1638793 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QP021_RS07900 (QP021_007900) - 1638790..1639119 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QP021_RS07905 (QP021_007905) - 1639119..1640105 (-) 987 WP_000161314.1 ROK family glucokinase -
  QP021_RS07910 (QP021_007910) - 1640102..1640305 (-) 204 WP_000087561.1 YqgQ family protein -
  QP021_RS07915 (QP021_007915) - 1640286..1641749 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41429.85 Da        Isoelectric Point: 10.1030

>NTDB_id=1003506 QP021_RS07885 WP_000776412.1 1636102..1637172(-) (comGB) [Staphylococcus aureus strain SA-675]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNKILSLIG
YSDTIVLQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1003506 QP021_RS07885 WP_000776412.1 1636102..1637172(-) (comGB) [Staphylococcus aureus strain SA-675]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATAAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCCTGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
GATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.438

100

0.994
  comGB Staphylococcus aureus N315

99.438

100

0.994

Multiple sequence alignment