Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   EL310_RS03080 Genome accession   NZ_LR134522
Coordinates   526545..527486 (+) Length   313 a.a.
NCBI ID   WP_126375179.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC3372     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 521545..532486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL310_RS03055 (NCTC3372_00539) - 522771..523358 (-) 588 WP_002246908.1 superoxide dismutase -
  EL310_RS03065 (NCTC3372_00540) dnaB 523521..524927 (+) 1407 WP_002219448.1 replicative DNA helicase -
  EL310_RS03070 (NCTC3372_00541) pilH 525236..525904 (+) 669 WP_002246885.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EL310_RS03075 (NCTC3372_00542) pilV 525934..526548 (+) 615 WP_002222656.1 type IV pilus modification protein PilV Regulator
  EL310_RS03080 (NCTC3372_00543) pilJ 526545..527486 (+) 942 WP_126375179.1 PilW family protein Machinery gene
  EL310_RS03085 (NCTC3372_00544) pilK 527465..528058 (+) 594 WP_002246881.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EL310_RS03090 (NCTC3372_00545) pilX 528063..528536 (+) 474 WP_002246911.1 PilX family type IV pilin Machinery gene
  EL310_RS03105 (NCTC3372_00546) - 529900..530328 (-) 429 Protein_523 AzlC family ABC transporter permease -
  EL310_RS03110 (NCTC3372_00547) dut 530471..530923 (+) 453 WP_002226436.1 dUTP diphosphatase -
  EL310_RS03115 (NCTC3372_00548) dapC 530999..532186 (+) 1188 WP_002222650.1 succinyldiaminopimelate transaminase -
  EL310_RS13985 - 532274..532399 (+) 126 Protein_526 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34349.93 Da        Isoelectric Point: 8.9806

>NTDB_id=1003426 EL310_RS03080 WP_126375179.1 526545..527486(+) (pilJ) [Neisseria meningitidis strain NCTC3372]
MKRKMLNVPKGNYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLSAQQDLRNAATLIVRDARMAGGFG
CFNMSEHPATDVISDTTQQNSPFSLKRNSTNKLIPITESSNINYQNFFQVGSALIFQYGIDDVNASAATTVVSSCAAISK
PGKQILTLENVKKELKISDQDKEQNGNIARQRHVVNAYAVGRIAGEEGLFRFQLDDKGKWGNPQLLAKKIRHMKVRYIYV
SDCPEDDDAGKEEKFKYTGTFDSSTNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 942 bp        

>NTDB_id=1003426 EL310_RS03080 WP_126375179.1 526545..527486(+) (pilJ) [Neisseria meningitidis strain NCTC3372]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCAATTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTTCCGCGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCGAGAATGGCGGGCGGCTTCGGT
TGTTTCAATATGTCCGAGCATCCTGCAACTGATGTTATTTCCGATACGACGCAACAAAATTCTCCTTTTTCCTTAAAAAG
GAACAGTACAAATAAACTTATCCCCATAACGGAATCTTCAAATATCAATTATCAGAATTTTTTCCAGGTTGGTAGCGCAT
TGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTCGTCAGCAGCTGTGCCGCAATATCGAAA
CCGGGCAAGCAAATCCTTACTTTAGAAAATGTAAAAAAAGAATTGAAGATTTCGGATCAGGATAAGGAGCAAAATGGCAA
TATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAAT
TGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAGACATATGAAAGTGCGGTATATCTATGTT
TCCGACTGCCCTGAAGATGACGATGCCGGCAAAGAGGAAAAATTCAAATATACGGGTACATTCGACAGCTCCACAAATGC
TGTTACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTT
ATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

84.177

100

0.85