Detailed information NTG1003345

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: ABHL50_RS09235
• Genome accession: NZ_CP156933
• Coordinates: 1886003..1886704 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain 2024CK-00546
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1881003..1891704

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABHL50_RS09200 (ABHL50_09200)	kdsB	1881526..1882287 (+)	762	WP_000680694.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ABHL50_RS09205 (ABHL50_09205)	-	1882299..1883279 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
ABHL50_RS09210 (ABHL50_09210)	-	1883291..1883632 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
ABHL50_RS09215 (ABHL50_09215)	-	1883650..1884423 (+)	774	WP_000497298.1	TatD family hydrolase	-
ABHL50_RS09220 (ABHL50_09220)	-	1884461..1885069 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
ABHL50_RS09225 (ABHL50_09225)	-	1885079..1885633 (+)	555	WP_000841373.1	type II secretion system protein	-
ABHL50_RS09230 (ABHL50_09230)	xcpV	1885623..1886003 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
ABHL50_RS09235 (ABHL50_09235)	xcpW	1886003..1886704 (+)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
ABHL50_RS09240 (ABHL50_09240)	gspK	1886704..1887663 (+)	960	WP_000301463.1	type II secretion system minor pseudopilin GspK	-
ABHL50_RS09245 (ABHL50_09245)	-	1887893..1888489 (+)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
ABHL50_RS09250 (ABHL50_09250)	ung	1888540..1889253 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
ABHL50_RS09255 (ABHL50_09255)	-	1889250..1890374 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
ABHL50_RS09260 (ABHL50_09260)	tadA	1890381..1890884 (+)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
ABHL50_RS09265 (ABHL50_09265)	-	1890954..1891397 (+)	444	WP_001246676.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=1003345 ABHL50_RS09235 WP_000594572.1 1886003..1886704(+) (xcpW) [Acinetobacter baumannii strain 2024CK-00546]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=1003345 ABHL50_RS09235 WP_000594572.1 1886003..1886704(+) (xcpW) [Acinetobacter baumannii strain 2024CK-00546]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GGTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991