Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   EL264_RS06655 Genome accession   NZ_LR134519
Coordinates   1373709..1373969 (+) Length   86 a.a.
NCBI ID   WP_000602757.1    Uniprot ID   B5Z817
Organism   Helicobacter pylori strain NCTC12823     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1368709..1378969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL264_RS06635 (NCTC12823_01320) - 1369322..1370311 (-) 990 WP_126474667.1 DNA adenine methylase -
  EL264_RS06640 (NCTC12823_01321) - 1370724..1371488 (+) 765 WP_126474668.1 hypothetical protein -
  EL264_RS06645 (NCTC12823_01322) - 1371500..1373416 (+) 1917 WP_126474669.1 toprim domain-containing protein -
  EL264_RS06650 (NCTC12823_01323) - 1373406..1373708 (+) 303 WP_000649851.1 TrbC/VirB2 family protein -
  EL264_RS06655 (NCTC12823_01324) comB3 1373709..1373969 (+) 261 WP_000602757.1 hypothetical protein Machinery gene
  EL264_RS06660 (NCTC12823_01325) - 1373982..1376480 (+) 2499 WP_126474670.1 VirB4 family type IV secretion system protein -
  EL264_RS06665 (NCTC12823_01326) - 1376473..1378404 (+) 1932 WP_126474866.1 type IA DNA topoisomerase -
  EL264_RS08335 (NCTC12823_01327) - 1378404..1378532 (+) 129 WP_269471662.1 hypothetical protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10140.01 Da        Isoelectric Point: 4.6082

>NTDB_id=1003304 EL264_RS06655 WP_000602757.1 1373709..1373969(+) (comB3) [Helicobacter pylori strain NCTC12823]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALVTMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=1003304 EL264_RS06655 WP_000602757.1 1373709..1373969(+) (comB3) [Helicobacter pylori strain NCTC12823]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATAATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTGTATGGCGTGGTGCTATTGGTAGCATTGG
TAACAATGTTTTACATATTAGAATTTTTTGATGAAGATATTACAAACATTATCTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z817

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453