Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   ABEF88_RS03920 Genome accession   NZ_CP156804
Coordinates   769885..771006 (-) Length   373 a.a.
NCBI ID   WP_034585991.1    Uniprot ID   A0A0A3W5X9
Organism   Acinetobacter thermotolerans strain ANC 7881     
Function   mediate the depolymerization of the type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 764885..776006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF88_RS03890 (ABEF88_03890) - 765637..766485 (+) 849 WP_347453611.1 class II glutamine amidotransferase -
  ABEF88_RS03895 (ABEF88_03895) - 766759..767214 (+) 456 WP_347453612.1 bacteriohemerythrin -
  ABEF88_RS03900 (ABEF88_03900) - 767355..768434 (+) 1080 WP_347453613.1 hypothetical protein -
  ABEF88_RS03905 (ABEF88_03905) - 768434..768760 (+) 327 WP_347453614.1 RnfH family protein -
  ABEF88_RS03910 (ABEF88_03910) - 768870..769268 (-) 399 WP_034585986.1 outer membrane protein assembly factor BamE -
  ABEF88_RS03915 (ABEF88_03915) fur 769381..769818 (+) 438 WP_347453615.1 ferric iron uptake transcriptional regulator -
  ABEF88_RS03920 (ABEF88_03920) pilU 769885..771006 (-) 1122 WP_034585991.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ABEF88_RS03925 (ABEF88_03925) pilT 771039..772076 (-) 1038 WP_034585994.1 type IV pilus twitching motility protein PilT Machinery gene
  ABEF88_RS03930 (ABEF88_03930) - 772200..772886 (+) 687 WP_347453616.1 YggS family pyridoxal phosphate-dependent enzyme -
  ABEF88_RS03935 (ABEF88_03935) - 772922..774028 (-) 1107 WP_347453617.1 acyltransferase -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 41557.71 Da        Isoelectric Point: 6.9356

>NTDB_id=1002968 ABEF88_RS03920 WP_034585991.1 769885..771006(-) (pilU) [Acinetobacter thermotolerans strain ANC 7881]
MDFNGLLDYMVAQKASDLFITADVEPSIKVNGTIVPIGNVKLPGSAVGQILHSIMSEKQRKEFAETRECNFAITNASKSA
RFRVSAFQQRDQPGMVLRRIETVIPTMDDLKLPPILKELAMTKRGIIIFVGATGTGKSTSLASMIGYRNENSKGHIITIE
DPIEFVHQHKGCIITQREVGIDTDSFEVALKNTLRQAPDVILIGEIRSRETMDYAIAFAETGHLVFATLHANNANQAIDR
IIHFFEADRHSQLFMDLSLNLRAMVAQQLIPTIDGTGRRAAIEILINSPLVSDLIRKGDVHEIKDLMKRSRELGMQTFDQ
ALYDLYKAKQISYKDALKHADSPNDLRLQIKLSEEGGAHLMNSHSNITFDGQS

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=1002968 ABEF88_RS03920 WP_034585991.1 769885..771006(-) (pilU) [Acinetobacter thermotolerans strain ANC 7881]
ATGGATTTTAACGGTTTACTTGATTACATGGTGGCACAAAAGGCATCGGATCTGTTTATTACCGCCGATGTTGAGCCTTC
CATTAAAGTAAATGGCACGATTGTGCCGATTGGCAACGTCAAACTGCCGGGTTCTGCAGTAGGCCAGATTCTGCATTCGA
TCATGTCGGAAAAGCAGCGCAAGGAATTTGCTGAAACCCGTGAATGTAACTTTGCCATTACCAATGCCAGCAAATCGGCA
CGTTTCCGTGTCAGTGCTTTCCAGCAGCGTGACCAGCCAGGTATGGTGTTGCGTCGGATTGAAACCGTGATTCCGACCAT
GGATGATCTGAAGTTACCGCCGATTCTAAAAGAACTGGCAATGACCAAGCGCGGGATTATCATTTTCGTAGGGGCAACCG
GTACTGGTAAATCAACCTCATTGGCTTCGATGATTGGCTACCGGAATGAAAATTCCAAAGGCCACATCATTACCATTGAA
GACCCGATCGAATTCGTGCACCAGCATAAGGGCTGTATCATTACCCAGCGTGAGGTCGGCATCGATACCGATTCTTTCGA
AGTTGCGCTGAAAAACACCCTGCGTCAGGCACCCGATGTGATCCTGATCGGTGAGATCCGTTCCCGCGAGACCATGGACT
ATGCCATTGCCTTTGCAGAAACCGGTCACCTGGTGTTTGCTACCCTGCACGCCAATAACGCCAACCAGGCGATTGACCGG
ATCATTCACTTCTTTGAAGCGGATCGTCATAGCCAGCTGTTTATGGACTTGTCCCTGAACTTACGTGCCATGGTGGCCCA
ACAGCTGATTCCTACCATTGATGGTACCGGCCGACGTGCAGCAATTGAAATTCTGATCAACTCGCCACTGGTTTCAGATC
TGATCCGTAAAGGTGATGTACATGAGATCAAGGATTTGATGAAGCGTTCACGTGAACTCGGTATGCAGACTTTCGACCAG
GCATTGTATGACCTGTATAAGGCCAAACAGATCAGCTATAAAGATGCACTGAAACATGCCGACTCACCAAATGACTTGCG
TCTGCAAATCAAGCTTTCTGAGGAAGGCGGTGCCCATCTGATGAATTCACATAGCAACATCACATTTGATGGCCAGTCTT
AA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(12-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3W5X9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Acinetobacter baylyi ADP1

73.28

100

0.743
  pilU Pseudomonas stutzeri DSM 10701

68.733

99.464

0.684
  pilU Vibrio cholerae strain A1552

55.676

99.196

0.552
  pilT Legionella pneumophila strain Lp02

44.643

90.08

0.402
  pilT Legionella pneumophila strain ERS1305867

44.643

90.08

0.402
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.064

92.761

0.399
  pilT Acinetobacter baumannii D1279779

42.566

91.957

0.391
  pilT Acinetobacter nosocomialis M2

42.566

91.957

0.391
  pilT Acinetobacter baumannii strain A118

42.566

91.957

0.391
  pilT Pseudomonas aeruginosa PAK

41.04

92.761

0.381
  pilT Neisseria gonorrhoeae MS11

40.936

91.689

0.375
  pilT Neisseria meningitidis 8013

40.936

91.689

0.375
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

39.886

94.102

0.375
  pilT Vibrio cholerae strain A1552

39.886

94.102

0.375
  pilT Acinetobacter baylyi ADP1

40.816

91.957

0.375
  pilT Pseudomonas stutzeri DSM 10701

40.462

92.761

0.375

Multiple sequence alignment