Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABEF90_RS01745 Genome accession   NZ_CP156793
Coordinates   365254..365898 (+) Length   214 a.a.
NCBI ID   WP_347453499.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7914     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 360254..370898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF90_RS01730 (ABEF90_01730) - 360428..361453 (+) 1026 WP_347452896.1 transposase domain-containing protein -
  ABEF90_RS01735 (ABEF90_01735) ponA 361498..364029 (-) 2532 WP_347454504.1 penicillin-binding protein PBP1a -
  ABEF90_RS01740 (ABEF90_01740) pilM 364196..365254 (+) 1059 WP_347455476.1 pilus assembly protein PilM Machinery gene
  ABEF90_RS01745 (ABEF90_01745) pilN 365254..365898 (+) 645 WP_347453499.1 PilN domain-containing protein Machinery gene
  ABEF90_RS01750 (ABEF90_01750) pilO 365895..366650 (+) 756 WP_404798872.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEF90_RS01755 (ABEF90_01755) pilP 366650..367177 (+) 528 WP_347463953.1 pilus assembly protein PilP Machinery gene
  ABEF90_RS01760 (ABEF90_01760) pilQ 367194..369359 (+) 2166 WP_347463951.1 type IV pilus secretin PilQ family protein Machinery gene
  ABEF90_RS01765 (ABEF90_01765) aroK 369396..369932 (+) 537 WP_347454501.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23990.23 Da        Isoelectric Point: 4.7839

>NTDB_id=1002837 ABEF90_RS01745 WP_347453499.1 365254..365898(+) (pilN) [Acinetobacter thermotolerans strain ANC 7914]
MAKINLLPWRDELRVKRNNEFIAYCVGALLLGVTAAGGGWFYYDQKLQDQEQANQLIISTNQNLDVQLKSLDGLQEQRDA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPSDMYVTKFVRTGDKFTIEGKAASPNTVAELLRNLEASPWYRNAFMNSFLA
AEEKKDKAPSSLIPRIEESYGTFTVTVDLDQIAQPVLSEQQPQAAETTTQGATS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1002837 ABEF90_RS01745 WP_347453499.1 365254..365898(+) (pilN) [Acinetobacter thermotolerans strain ANC 7914]
ATGGCAAAAATTAACCTATTGCCTTGGCGTGATGAGCTAAGAGTCAAAAGAAATAATGAATTTATCGCATATTGCGTAGG
GGCTTTGTTGCTCGGTGTAACAGCAGCAGGGGGCGGCTGGTTCTATTACGATCAAAAATTACAGGATCAGGAACAGGCCA
ATCAACTTATCATTAGTACCAACCAGAATCTGGATGTGCAGCTGAAATCACTCGATGGTTTGCAAGAGCAGCGTGATGCG
ATTGTCGAGCGTATGAAACTGATTCAGGGCTTGCAAACCCAGCGTCCGATTGCGGTGCATCTGATTGATGAAATTGTGCG
GGTAACGCCAAGTGATATGTATGTCACCAAGTTTGTACGTACCGGGGATAAGTTCACGATTGAAGGCAAGGCTGCAAGTC
CAAATACCGTGGCAGAGTTGCTTCGTAATTTGGAAGCCTCTCCTTGGTATCGCAATGCATTTATGAATTCGTTCCTGGCA
GCGGAAGAGAAGAAGGACAAAGCACCAAGTTCTCTGATTCCGCGTATTGAAGAGTCTTATGGAACGTTCACAGTAACTGT
TGATCTTGACCAGATTGCTCAGCCTGTGCTTTCCGAGCAGCAACCACAGGCAGCTGAGACAACTACACAGGGGGCGACAT
CATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

75.648

90.187

0.682
  comN Acinetobacter baylyi ADP1

69.565

96.729

0.673

Multiple sequence alignment