Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   EL215_RS09155 Genome accession   NZ_LR134481
Coordinates   1835111..1836451 (-) Length   446 a.a.
NCBI ID   WP_049356533.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain NCTC10665     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1830111..1841451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL215_RS09135 (NCTC10665_01838) potA 1831087..1832202 (+) 1116 WP_049356537.1 spermidine/putrescine ABC transporter ATP-binding protein PotA -
  EL215_RS09140 (NCTC10665_01839) potB 1832186..1833046 (+) 861 WP_005695833.1 spermidine/putrescine ABC transporter permease PotB -
  EL215_RS09145 (NCTC10665_01840) potC 1833046..1833816 (+) 771 WP_049356535.1 spermidine/putrescine ABC transporter permease PotC -
  EL215_RS09150 (NCTC10665_01841) - 1833951..1835033 (+) 1083 WP_005698550.1 extracellular solute-binding protein -
  EL215_RS09155 (NCTC10665_01842) rarA 1835111..1836451 (-) 1341 WP_049356533.1 replication-associated recombination protein A Machinery gene
  EL215_RS09160 (NCTC10665_01843) lolA 1836505..1837131 (-) 627 WP_126471658.1 outer membrane lipoprotein chaperone LolA -
  EL215_RS09165 (NCTC10665_01844) - 1837168..1839957 (-) 2790 WP_126471660.1 DNA translocase FtsK -
  EL215_RS09170 (NCTC10665_01845) lrp 1839961..1840440 (-) 480 WP_049356528.1 leucine-responsive transcriptional regulator Lrp -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50240.14 Da        Isoelectric Point: 6.6711

>NTDB_id=1002583 EL215_RS09155 WP_049356533.1 1835111..1836451(-) (rarA) [Haemophilus parainfluenzae strain NCTC10665]
MSNLNFDFAENDFRPLAARMRPTNLEQYYGQTHLIGEGKPLRKAIQAGHVHSMILWGPPGTGKTTLVEVIAHRINAEVER
ISAVTSGVKEIRESIERAKQNRLADRQTILFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARVY
LLKSLTVAEIEQVLKLAISDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMASDTENGKKLDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSIRGSAADAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYNAFNAAKQHAKEFPDFDVPPHLRNAPTALMKELGYGAEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLQEQDKNSLKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=1002583 EL215_RS09155 WP_049356533.1 1835111..1836451(-) (rarA) [Haemophilus parainfluenzae strain NCTC10665]
ATGTCTAATCTGAATTTTGATTTTGCTGAAAATGACTTTCGCCCTTTAGCTGCTCGTATGCGTCCAACAAATTTGGAACA
ATATTATGGACAGACGCATTTAATTGGGGAAGGAAAGCCTCTTCGTAAAGCAATTCAAGCAGGGCATGTTCATTCTATGA
TTTTGTGGGGACCGCCGGGTACAGGTAAAACAACACTGGTAGAAGTTATTGCTCATCGTATCAATGCAGAAGTTGAACGG
ATTTCAGCGGTAACAAGTGGCGTGAAAGAAATTCGAGAATCAATTGAGCGTGCGAAACAAAATCGACTTGCAGATCGCCA
AACGATTTTATTTGTGGATGAAGTGCATCGCTTTAACAAAAGCCAACAAGATGCGTTTTTACCCCATATTGAAGATGGGA
CGATTATTTTTATTGGTGCAACAACGGAAAATCCTTCCTTTGAATTAAATAATGCATTGCTTTCTCGTGCGAGAGTTTAT
CTCCTTAAGTCATTGACAGTTGCTGAAATCGAACAAGTTCTAAAGCTGGCGATTTCTGATCCTGAGCGAGGATTAGGTAA
AGAACGGTTAATTTTAGAAGAGAATTTACTACAGGTATTAGCCGAATATGTGAATGGTGATGCTCGCCTGGCTTTAAACT
GTCTTGAACTGATGGTGGATATGGCTTCTGACACAGAAAACGGTAAAAAATTAGACCGCACTTTGTTGAAAGAAGTATTA
GGTGAGAGACAAGCGCGTTTTGATAAACAAGGCGATCGTTTTTATGATTTGATTTCTGCTTTACATAAATCCATTCGAGG
TTCAGCAGCAGATGCGGCGCTTTACTGGTATGCACGAATTATTACTGCAGGCGGCGATCCGCTTTATGTTGCACGACGTT
TATTAGCGATTGCCTCAGAAGATGTGGGTAATGCTGACCCAAGAGCAATGCAAGTTGCACTAGCGGCTTGGGATTGTTTT
ACAAGAGTGGGCGCTTATGAAGGAGAGCGAGCCATTGCGCAAGCCATTATTTATTTGGCTGTAGCTCCGAAGAGTAATGC
GGTTTACAACGCATTTAATGCAGCCAAACAACATGCAAAAGAGTTTCCTGATTTCGATGTGCCACCTCATTTACGTAATG
CGCCAACGGCTTTAATGAAAGAATTAGGTTATGGCGCTGAATATCGTTATGCACATGATGAACCAAATGCTTATGCTGCA
GGAGAAAATTACTTCCCACCAGAACTGAAAGATACGCAGTATTATTTCCCAACTAACCGAGGCATGGAAATTCAGATTAA
AGAAAAACTTGAGCGTTTACAAGAGCAAGATAAAAACTCGTTAAAAAAACGCTATAAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(53-159)

AAA C-terminal domain (AAA_assoc_2)

(188-266)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.671

95.516

0.379