Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CV024_RS01975 Genome accession   NZ_CP156745
Coordinates   410966..411667 (-) Length   233 a.a.
NCBI ID   WP_044363313.1    Uniprot ID   -
Organism   Vibrio fluvialis strain QY27     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 405966..416667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV024_RS01945 (CV024_01945) gspL 406218..407429 (+) 1212 WP_100267570.1 type II secretion system protein GspL -
  CV024_RS01950 (CV024_01950) - 407439..407945 (+) 507 WP_100267571.1 type II secretion system protein M -
  CV024_RS01955 (CV024_01955) - 407945..408703 (+) 759 WP_100267572.1 type II secretion system protein N -
  CV024_RS01960 (CV024_01960) cysQ 408733..409560 (-) 828 WP_020429367.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  CV024_RS01965 (CV024_01965) nudE 409584..410132 (-) 549 WP_047459232.1 ADP compounds hydrolase NudE -
  CV024_RS01970 (CV024_01970) nfuA 410278..410865 (-) 588 WP_024373335.1 Fe-S biogenesis protein NfuA -
  CV024_RS01975 (CV024_01975) comF 410966..411667 (-) 702 WP_044363313.1 amidophosphoribosyltransferase Machinery gene
  CV024_RS01980 (CV024_01980) bioH 411754..412524 (+) 771 WP_100267573.1 pimeloyl-ACP methyl ester esterase BioH -
  CV024_RS01985 (CV024_01985) - 412653..413123 (+) 471 WP_020329343.1 hypothetical protein -
  CV024_RS01990 (CV024_01990) - 413206..415515 (-) 2310 WP_100267574.1 Tex family protein -
  CV024_RS01995 (CV024_01995) - 415571..416233 (-) 663 WP_100267575.1 hypothetical protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26363.40 Da        Isoelectric Point: 8.8535

>NTDB_id=1002441 CV024_RS01975 WP_044363313.1 410966..411667(-) (comF) [Vibrio fluvialis strain QY27]
MLTNRLQKTMFSWLRPSCQLCGLPLESHNTQSLCGACLDWYAPTTRCARCGLPCETATEQCGQCLTSPPPWHKLYCLGDY
RFPLSQSVHQLKYQRQFWQAQPLAGLLAPRIVSPAPLVTCVPLHWRRHAWRGFNQSDVLARQLAQQLGSQYQPRLFSRRL
ATPPQQGLNKAQRRRNLNQAFVLNSAPSHRHIAIVDDVVTTGSTVRQLCNLLLDVGVESLDIYCICRTPEPGD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1002441 CV024_RS01975 WP_044363313.1 410966..411667(-) (comF) [Vibrio fluvialis strain QY27]
ATGTTAACCAATCGACTTCAAAAAACCATGTTTTCGTGGCTGAGACCGTCGTGTCAGCTGTGCGGTTTGCCCCTTGAATC
GCATAACACGCAGAGCTTGTGTGGCGCATGCCTCGACTGGTACGCACCAACCACGCGTTGCGCTCGCTGCGGCCTGCCTT
GTGAAACCGCCACCGAACAGTGTGGCCAATGCCTGACATCGCCGCCGCCGTGGCATAAGCTCTATTGTTTGGGCGATTAC
CGTTTTCCACTCAGTCAGAGCGTGCATCAGCTCAAATATCAGCGCCAGTTCTGGCAAGCGCAGCCGCTGGCCGGATTGTT
AGCCCCAAGAATTGTATCGCCCGCCCCTCTGGTGACCTGCGTGCCGCTGCACTGGCGCCGCCATGCCTGGCGCGGTTTCA
ATCAAAGTGATGTTTTGGCGCGTCAACTTGCGCAGCAACTCGGCAGCCAATACCAGCCTCGGCTGTTTTCCCGTCGCCTG
GCTACCCCGCCGCAGCAAGGCTTAAACAAAGCTCAGCGCCGGCGCAATCTCAACCAAGCTTTTGTCTTAAACAGTGCGCC
GAGCCACAGACACATCGCGATCGTTGATGATGTCGTCACCACAGGCAGTACGGTGCGACAATTATGCAATTTACTGCTTG
ATGTAGGCGTCGAAAGCCTTGATATTTACTGCATATGCCGCACTCCTGAACCGGGTGACTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

64.378

100

0.644
  comF Vibrio campbellii strain DS40M4

49.791

100

0.511

Multiple sequence alignment