Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EL147_RS07545 Genome accession   NZ_LR134341
Coordinates   1545003..1545785 (+) Length   260 a.a.
NCBI ID   WP_007892088.1    Uniprot ID   G5K7W8
Organism   Streptococcus pseudoporcinus strain NCTC13786     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1540003..1550785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL147_RS07525 (NCTC13786_01511) - 1540488..1541450 (-) 963 WP_007892084.1 asparaginase -
  EL147_RS07530 (NCTC13786_01512) - 1541521..1542909 (+) 1389 WP_007892183.1 Cof-type HAD-IIB family hydrolase -
  EL147_RS07535 (NCTC13786_01513) - 1542947..1543399 (-) 453 WP_007892092.1 universal stress protein -
  EL147_RS07540 (NCTC13786_01514) - 1543596..1544810 (+) 1215 WP_007892125.1 pyridoxal phosphate-dependent aminotransferase -
  EL147_RS07545 (NCTC13786_01515) codY 1545003..1545785 (+) 783 WP_007892088.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EL147_RS07550 (NCTC13786_01516) - 1545790..1546338 (+) 549 WP_007892122.1 cysteine hydrolase family protein -
  EL147_RS07555 (NCTC13786_01517) - 1546373..1546633 (-) 261 WP_007892095.1 metal-sensitive transcriptional regulator -
  EL147_RS07560 (NCTC13786_01518) - 1547352..1548314 (-) 963 WP_007892160.1 3-hydroxyacyl-CoA dehydrogenase -
  EL147_RS07565 (NCTC13786_01519) - 1548495..1549124 (+) 630 WP_007892104.1 helix-turn-helix transcriptional regulator -
  EL147_RS07570 (NCTC13786_01520) - 1549137..1549943 (+) 807 WP_007892076.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28835.14 Da        Isoelectric Point: 4.5842

>NTDB_id=1002125 EL147_RS07545 WP_007892088.1 1545003..1545785(+) (codY) [Streptococcus pseudoporcinus strain NCTC13786]
MPNLLEKTRKITSILQRSVDSLDAELPYNIMASRLADIIDCNACIINGGGTLLGYAMKYKTNNDRVEEFFEAQQFPESYV
KAASRVYDTEANLPIDNELTIFPIESKETYPEGLTTIAPIYGGGMRLGSLIIWRNDKKFNDDDLILIEISSTVVGIQLLN
LQTENLEETIRKQTAVNMAMNTLSYSEMKAVAAILGELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFEKLKEI

Nucleotide


Download         Length: 783 bp        

>NTDB_id=1002125 EL147_RS07545 WP_007892088.1 1545003..1545785(+) (codY) [Streptococcus pseudoporcinus strain NCTC13786]
ATGCCCAACTTATTAGAAAAAACTCGTAAAATTACCTCAATCCTTCAACGTTCCGTAGACAGTCTTGATGCTGAATTACC
ATACAATATTATGGCTTCCCGATTAGCGGATATCATTGACTGTAATGCCTGTATCATAAATGGTGGTGGTACCCTTTTGG
GGTATGCTATGAAGTACAAAACCAACAATGACCGCGTTGAGGAGTTTTTTGAAGCTCAGCAATTCCCAGAATCCTACGTT
AAAGCGGCTAGCCGAGTTTATGATACTGAGGCTAACTTGCCAATCGATAATGAATTAACCATCTTCCCTATTGAATCCAA
GGAGACCTATCCAGAAGGTTTAACAACTATTGCCCCGATTTACGGAGGTGGTATGCGCCTAGGATCATTAATCATTTGGC
GTAATGATAAGAAATTTAATGATGATGATTTGATTCTGATTGAAATTTCGAGTACCGTAGTAGGTATTCAATTGTTGAAT
CTCCAAACTGAGAATTTGGAGGAGACAATTCGTAAACAGACAGCCGTTAATATGGCAATGAATACTTTGTCATACTCAGA
AATGAAAGCTGTAGCGGCTATTTTAGGAGAACTAGATGGAAATGAAGGCCGTTTAACTGCTTCAGTTATTGCTGATCGTA
TCGGCATTACCCGTTCAGTAATTGTTAATGCACTGCGTAAATTGGAGAGCGCGGGTATTATTGAAAGCCGTTCTTTAGGA
ATGAAAGGTACTTATCTTAAAGTTATCAACGAAGGTATCTTCGAAAAACTAAAGGAAATCTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5K7W8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

66.148

98.846

0.654
  codY Bacillus subtilis subsp. subtilis str. 168

54.217

95.769

0.519

Multiple sequence alignment