Detailed information NTG1002086

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ABFY42_RS08430
• Genome accession: NZ_CP156682
• Coordinates: 1671510..1672289 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain B115
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1666510..1677289

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABFY42_RS08410 (ABFY42_08410)	trmFO	1667197..1668504 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ABFY42_RS08415 (ABFY42_08415)	xerC	1668574..1669491 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ABFY42_RS08420 (ABFY42_08420)	hslV	1669507..1670052 (+)	546	WP_022553348.1	ATP-dependent protease subunit HslV	-
ABFY42_RS08425 (ABFY42_08425)	hslU	1670060..1671472 (+)	1413	WP_254894347.1	HslU--HslV peptidase ATPase subunit	-
ABFY42_RS08430 (ABFY42_08430)	codY	1671510..1672289 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ABFY42_RS08435 (ABFY42_08435)	flgB	1672643..1673032 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ABFY42_RS08440 (ABFY42_08440)	flgC	1673032..1673484 (+)	453	WP_022553347.1	flagellar basal body rod protein FlgC	-
ABFY42_RS08445 (ABFY42_08445)	fliE	1673495..1673815 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ABFY42_RS08450 (ABFY42_08450)	fliF	1673858..1675468 (+)	1611	WP_022553346.1	flagellar basal-body MS-ring/collar protein FliF	-
ABFY42_RS08455 (ABFY42_08455)	fliG	1675481..1676497 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ABFY42_RS08460 (ABFY42_08460)	fliH	1676490..1677245 (+)	756	WP_022553345.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1002086 ABFY42_RS08430 WP_003154263.1 1671510..1672289(+) (codY) [Bacillus velezensis strain B115]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1002086 ABFY42_RS08430 WP_003154263.1 1671510..1672289(+) (codY) [Bacillus velezensis strain B115]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCAGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471