Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EL133_RS08450 Genome accession   NZ_LR134323
Coordinates   1639510..1640292 (-) Length   260 a.a.
NCBI ID   WP_006739450.1    Uniprot ID   G5KCW8
Organism   Streptococcus urinalis strain NCTC13766     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1634510..1645292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL133_RS08425 (NCTC13766_01749) gatB 1635182..1636621 (-) 1440 WP_006739725.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  EL133_RS08430 (NCTC13766_01750) gatA 1636621..1638087 (-) 1467 WP_006738966.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  EL133_RS08435 (NCTC13766_01751) gatC 1638087..1638389 (-) 303 WP_006740259.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  EL133_RS08440 (NCTC13766_01752) - 1638516..1638815 (-) 300 WP_006739800.1 rhodanese-like domain-containing protein -
  EL133_RS08445 (NCTC13766_01753) - 1638840..1639388 (-) 549 WP_006739971.1 cysteine hydrolase family protein -
  EL133_RS08450 (NCTC13766_01754) codY 1639510..1640292 (-) 783 WP_006739450.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EL133_RS08455 (NCTC13766_01755) - 1640528..1641742 (-) 1215 WP_006738849.1 pyridoxal phosphate-dependent aminotransferase -
  EL133_RS08460 (NCTC13766_01756) - 1641898..1642350 (+) 453 WP_006740012.1 universal stress protein -
  EL133_RS08465 (NCTC13766_01757) - 1642380..1643759 (-) 1380 WP_006738533.1 Cof-type HAD-IIB family hydrolase -
  EL133_RS08470 (NCTC13766_01758) - 1643831..1644796 (+) 966 WP_006740750.1 asparaginase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28782.87 Da        Isoelectric Point: 4.3445

>NTDB_id=1001698 EL133_RS08450 WP_006739450.1 1639510..1640292(-) (codY) [Streptococcus urinalis strain NCTC13766]
MPNLLQQTRRITSILQRTVDSLDSELPYNTMAAQLADIIDCNACIINGGGALLGYAMKYKTNTDRVEEFFEAKQFPEEYV
KSASRIYDTEANLPVENDLTVFPVESKDIYPDGLTTIAPIYGGGMRLGTLIIWRNDKEFSDDDLILVEISSTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVAAILGELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLQEF

Nucleotide


Download         Length: 783 bp        

>NTDB_id=1001698 EL133_RS08450 WP_006739450.1 1639510..1640292(-) (codY) [Streptococcus urinalis strain NCTC13766]
ATGCCAAATTTATTACAACAAACACGTCGTATTACATCGATTTTACAACGCACAGTTGACAGTCTTGATTCTGAATTACC
TTATAATACTATGGCAGCACAGCTTGCTGATATCATTGATTGTAATGCATGTATTATCAACGGTGGTGGTGCATTGTTAG
GTTATGCGATGAAATATAAAACAAACACTGATCGTGTTGAAGAATTTTTCGAAGCCAAACAATTTCCAGAAGAATATGTG
AAATCTGCTAGTCGCATTTACGATACTGAAGCAAATTTACCTGTTGAAAATGACTTAACAGTCTTTCCAGTGGAATCAAA
AGATATTTATCCAGATGGTTTGACAACTATTGCACCTATTTACGGTGGTGGTATGCGTCTAGGGACACTTATCATCTGGC
GTAATGATAAAGAATTCAGCGATGATGATTTAATTCTTGTTGAAATTTCAAGTACCGTTGTTGGTATCCAACTATTGAAT
CTTCAAACTGAAAACCTTGAAGAAACCATCCGTAAACAAACGGCTGTTAATATGGCAATCAATACTTTGTCATATTCTGA
AATGAAAGCTGTAGCAGCTATTTTAGGAGAACTTGATGGCAATGAAGGACGTCTTACGGCATCAGTTATCGCTGATCGTA
TTGGGATTACACGCTCAGTGATTGTAAATGCCTTACGTAAGCTTGAAAGTGCGGGTATTATTGAAAGTCGTTCATTAGGT
ATGAAAGGAACTTACCTAAAGGTTATCAATGAAGGTATCTTCGATAAATTGCAAGAATTCTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5KCW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.759

98.846

0.65
  codY Bacillus subtilis subsp. subtilis str. 168

52.157

98.077

0.512