Detailed information NTG0100126

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: BAMY6639_RS03855
• Genome accession: NZ_CP006058
• Coordinates: 834493..835761 (+)
• Length: 422 a.a.
• NCBI ID: WP_015240288.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens UMAF6639
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 829493..840761

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMY6639_RS03835 (BAMY6639_04055)	-	830864..831484 (-)	621	WP_148660091.1	tetratricopeptide repeat protein	-
BAMY6639_RS03840 (BAMY6639_04060)	mnmA	831572..832687 (-)	1116	WP_012118077.1	tRNA 2-thiouridine(34) synthase MnmA	-
BAMY6639_RS03845 (BAMY6639_04065)	-	832724..833863 (-)	1140	WP_061860751.1	cysteine desulfurase family protein	-
BAMY6639_RS03850 (BAMY6639_04070)	cymR	833882..834298 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
BAMY6639_RS03855 (BAMY6639_04075)	rarA	834493..835761 (+)	1269	WP_015240288.1	replication-associated recombination protein A	Machinery gene
BAMY6639_RS03860 (BAMY6639_04080)	-	835877..836641 (-)	765	WP_015240289.1	tRNA threonylcarbamoyladenosine dehydratase	-
BAMY6639_RS03870 (BAMY6639_04085)	aspS	836967..838745 (-)	1779	WP_031378916.1	aspartate--tRNA ligase	-
BAMY6639_RS03875 (BAMY6639_04090)	hisS	838760..840034 (-)	1275	WP_015417909.1	histidine--tRNA ligase	-
BAMY6639_RS20275 (BAMY6639_04100)	-	840391..840561 (-)	171	WP_012118083.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46661.51 Da
• Isoelectric Point: 7.9149

>NTDB_id=100126 BAMY6639_RS03855 WP_015240288.1 834493..835761(+) (rarA) [Bacillus amyloliquefaciens UMAF6639]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALER
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=100126 BAMY6639_RS03855 WP_015240288.1 834493..835761(+) (rarA) [Bacillus amyloliquefaciens UMAF6639]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGTGCAAAGCACTTATCATCCATGATCCTGTACGGGCCGCCGGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGACGAAGTGCACAGGCTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAACCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGGACCCAGATCTTCGAGCTTGAACCGTTAACACCCGATCTGATCAAGCAGGCATTGGAAAGA
GCGCTCACAGATGAACACCGGGGACTCGGTTCCTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCGCAAGG
GTGCGGAGGAGACGTCCGCTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTCTCCACAAAGGAATCAAGCGACGGCACGA
TCCGGATTACACGGGAGACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATACTCATGATAAAAACGGCGATGCGCATTAT
GACGTCTTATCCGCCTTCCAAAAATCGATCCGAGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCGTCTGATCGA
AGCCGGCGACCTTGAAAGCATATCAAGAAGGCTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAGGCGCTCAAAGACATCAGGACGGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCTCACGATTTCGAGAACGGATGGGTCGAACAGCAATATTTGCCTGATCCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	91.211	99.763	0.91