Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   EL097_RS04515 Genome accession   NZ_LR134293
Coordinates   871817..874249 (-) Length   810 a.a.
NCBI ID   WP_129544938.1    Uniprot ID   -
Organism   Streptococcus canis strain NCTC12191     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 866817..879249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL097_RS04495 (NCTC12191_00885) - 866954..867394 (-) 441 WP_003045211.1 GNAT family N-acetyltransferase -
  EL097_RS04500 (NCTC12191_00886) pflB 867517..869844 (-) 2328 WP_003045209.1 formate C-acetyltransferase -
  EL097_RS04505 (NCTC12191_00887) dinB 870053..871147 (+) 1095 WP_003045208.1 DNA polymerase IV -
  EL097_RS04510 (NCTC12191_00888) - 871239..871727 (-) 489 WP_003045206.1 hypothetical protein -
  EL097_RS04515 (NCTC12191_00889) recD/recD2/recDB 871817..874249 (-) 2433 WP_129544938.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EL097_RS04520 (NCTC12191_00890) lepB 874310..874903 (-) 594 WP_003045201.1 signal peptidase I -
  EL097_RS04525 (NCTC12191_00891) rnhC 874914..875822 (-) 909 WP_003045200.1 ribonuclease HIII -
  EL097_RS04530 (NCTC12191_00892) - 875969..876277 (+) 309 WP_003045196.1 hypothetical protein -
  EL097_RS04535 (NCTC12191_00893) - 876280..876825 (+) 546 WP_003045194.1 CvpA family protein -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 91085.78 Da        Isoelectric Point: 4.9473

>NTDB_id=1000433 EL097_RS04515 WP_129544938.1 871817..874249(-) (recD/recD2/recDB) [Streptococcus canis strain NCTC12191]
MEYFFTGTVDRIIFENQANFFKILLLTIEDTDSDVDDIDIIITGTMADIVEGEDYTFWGELTQHPKYGQQVKLSRYQKMK
PNSSGLVTYFSSDHFKGIGKKTAEKIIALYGNNTIDHILEDPSKLESISSLSKVNRQAFVAKLKLNYGTEQIIAGLAELG
LSNRFAFQAFDQYKEEAIELIKENPYRLVEDLQGFGFKMADALAENLGIESDSPKRFRAALLHCLLEESINQGDTYVQAR
QLLSVTINLLEDARQVECQPAAVAQQLTSLIEEGNIKNIDTKLFDTSLYFAEEGIAKNIRRLLDQPLDSHLNSEAIQKEI
QALQDKFGITYDQVQQEALEKALTSKVFLLTGGPGTGKTTVIRGILQAYAKLHQLDLDKKDLPILLAAPTGRAARRMNEL
TGLPSATIHRHLGLTGDSDYQTIEDYLDCDLLIVDEFSMVDTWLANQLLSAVSSTTQVIIVGDSDQLPSVGPGQVLADLL
KVKNLPQIALRKIFRQSQESTIVALADQMRRGILAPDFREKKADRSYFEAQAAFIPDMIQKIVLSAIKSGIPAEEIQILA
PMYKGQAGINHLNQLMQDLLNPLEEQTEFLFNDTRFRKRDKVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDELVIA
FDGSEVTYPRNEWLKLTLAYAMSIHKSQGSEFQVVILPITRQSGRLLQRNLIYTAITRSKSKLIMLGELAAFDYAIHNEG
IKRQTYLVERFQEQEPEEKTQTNQTQADLEKSANHLNGQVISRSKAHSTKASLTKQQQPLCVLTPDNFLTIDPMIGITED
DICHFFQKNP

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=1000433 EL097_RS04515 WP_129544938.1 871817..874249(-) (recD/recD2/recDB) [Streptococcus canis strain NCTC12191]
ATGGAATACTTTTTCACAGGTACTGTTGACCGTATTATCTTTGAAAACCAAGCTAATTTTTTCAAAATTCTTCTCCTTAC
AATCGAGGATACTGACAGTGATGTGGATGATATAGACATCATTATCACTGGAACCATGGCTGACATTGTGGAAGGGGAAG
ATTATACCTTTTGGGGAGAATTAACCCAGCATCCTAAGTATGGTCAACAAGTCAAGCTGAGCCGTTATCAAAAAATGAAA
CCCAATTCCTCTGGTTTAGTGACTTATTTTTCTAGTGACCATTTCAAGGGGATTGGGAAAAAAACAGCTGAAAAGATTAT
TGCTCTCTATGGCAATAACACCATTGACCATATTTTAGAAGACCCCAGTAAACTGGAAAGCATTTCTAGCCTGTCCAAGG
TCAACCGCCAAGCCTTTGTAGCCAAACTCAAATTAAATTATGGTACCGAACAAATTATTGCTGGCTTAGCAGAGTTAGGC
TTAAGCAACCGTTTTGCCTTTCAAGCCTTTGACCAATACAAGGAAGAAGCCATTGAGCTGATTAAGGAAAATCCTTACCG
GCTAGTCGAAGACCTTCAAGGTTTTGGGTTTAAAATGGCTGATGCCCTAGCTGAAAACTTAGGAATTGAAAGCGACTCTC
CTAAACGTTTTCGGGCAGCTCTTTTGCATTGTCTCTTGGAAGAATCAATCAACCAAGGAGATACTTACGTTCAAGCACGC
CAATTACTATCTGTTACCATTAATCTCTTAGAAGATGCCCGTCAAGTAGAATGTCAGCCAGCTGCTGTTGCCCAACAATT
AACCTCCTTGATTGAAGAGGGCAATATTAAAAATATTGACACCAAGCTTTTTGATACCAGCCTTTACTTTGCTGAGGAAG
GAATTGCCAAAAATATCAGAAGACTTTTAGACCAACCTCTGGACAGTCACCTTAACTCTGAGGCTATCCAGAAAGAAATT
CAAGCCCTTCAAGATAAATTCGGCATCACCTATGATCAAGTCCAACAAGAAGCTCTTGAGAAGGCTTTGACCAGCAAAGT
ATTTCTACTAACAGGGGGACCAGGTACTGGAAAAACCACTGTTATTCGAGGAATCTTGCAAGCCTATGCCAAGCTTCACC
AGCTTGACCTTGACAAAAAAGATCTTCCTATTTTATTAGCAGCCCCAACAGGACGAGCAGCTCGGCGGATGAATGAGCTG
ACCGGACTTCCTAGTGCTACTATCCATAGACACCTCGGTTTAACTGGCGATAGTGACTATCAAACCATAGAAGACTATTT
GGATTGTGATTTGCTGATTGTGGATGAATTCTCCATGGTTGATACTTGGCTTGCCAATCAACTGCTATCTGCTGTCAGCT
CGACCACTCAGGTCATTATTGTGGGCGATAGTGACCAGCTGCCTTCTGTCGGCCCTGGGCAAGTGTTGGCAGATCTTTTA
AAGGTCAAAAATCTCCCACAAATTGCCCTAAGGAAAATCTTTCGCCAATCTCAAGAATCAACCATTGTAGCGTTGGCAGA
TCAGATGCGTCGTGGTATTTTAGCTCCAGATTTTAGAGAAAAAAAGGCTGATCGTTCTTATTTTGAAGCACAAGCAGCCT
TTATCCCTGACATGATTCAAAAAATTGTGCTTTCTGCTATCAAAAGCGGTATTCCTGCTGAAGAAATTCAAATTTTAGCC
CCTATGTATAAAGGACAGGCTGGCATCAATCATCTCAATCAACTAATGCAAGATCTCCTCAATCCCTTAGAAGAGCAGAC
AGAATTTCTGTTCAACGACACCCGCTTCCGTAAGAGGGATAAGGTTTTGCACTTGGTCAATGATGCTCAACTCAATGTCT
TTAATGGCGATATTGGTTATATCACTGACTTGATTCCAGCCAAATACACTGAATCCAAGCAGGACGAATTAGTTATAGCA
TTTGACGGCAGCGAAGTAACTTATCCTCGAAATGAATGGCTTAAATTAACCCTTGCCTATGCCATGAGCATTCATAAGTC
GCAAGGTAGTGAATTTCAGGTTGTTATTTTGCCAATCACCCGTCAAAGTGGACGACTGCTGCAACGCAATCTTATTTACA
CAGCTATCACACGTTCCAAAAGCAAACTCATTATGCTAGGAGAATTGGCCGCTTTTGATTATGCCATTCACAATGAGGGC
ATCAAGCGACAAACTTATTTGGTGGAACGCTTCCAAGAGCAAGAACCTGAAGAAAAAACTCAGACCAACCAAACACAAGC
TGACCTCGAAAAATCTGCAAATCACTTAAATGGTCAAGTAATCAGTCGTTCAAAAGCACATTCAACCAAGGCTAGCCTAA
CCAAGCAACAGCAGCCCCTTTGTGTCTTAACTCCTGATAATTTTCTTACCATTGATCCGATGATAGGGATTACAGAAGAC
GACATCTGCCACTTTTTTCAGAAAAATCCCTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(331-525)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.299

95.062

0.393