ICEberg ID | 242_IME |
Name | Tn4555 |
Family | - |
Organism | Bacteroides vulgatus CLA341 |
Size (bp) | 12105 bp |
GC content [Genome] (%) | |
Insertion site | AT-rich regions |
Function | -lactamase gene cfxA |
Species that IME can be transferred to | - |
Nucleotide Sequence | U75371.3 (complete IME sequence in this GenBank file) |
Replicon | - |
Coordinates | 1..12105 |
Putative oriT region | coordinates: 6390..6563; oriTDB id: 200008 ACGATTTAGACCTTGTGCTGGTCGGTGCATCTCCAATCGGCAACGATGATGAAAAACCTCCCTGACGGAG GAGAGCGGAAGCCGTAGGCTGGAGTTTGCAGACAATGGCTTGCCATTGATATAGCCCACTATAACTACAC GCTCCGCTTACGTAGTTGTGGGCTCTCCCGAGGG |
Putative relaxase | - |
The Interaction Network among ICE/IME/CIME/plasmid | ||||||
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Detailed Informatioin of the Interaction Network | ||||||
# | IME | Inter_Ele [Type] | Methods | Donors | Recipients | Exper_Ref |
1 | Tn4555 | CTn341 [ICE] | in trans | Bacteroides vulgatus | Escherichia coli | 14702313 |
2 | Tn4555 | RK2 [IncP plasmid] | in trans | Escherichia coli | Escherichia coli | 8386723 |
3 | Tn4555 | R751 [IncP plasmid] | in trans | Escherichia coli | Escherichia coli | 8386723 |
This is an interactioin derived from experimental literature |
The graph information of Tn4555 components from U75371 | |||||
Complete gene list of Tn4555 from U75371 | |||||
# | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
1 | tnpA | 358..1293 [+], 936 | TnpA | ||
2 | int | 1435..2553 [+], 1119 | integrase | Integrase | |
3 | tnpC | 2801..3658 [+], 858 | TnpC | ||
4 | xis | 3858..4232 [+], 375 | excisionase | ||
5 | - | 4238..5335 [+], 1098 | unknown | ||
6 | - | 5339..6454 [+], 1116 | unknown | ||
7 | mobA | 6582..8141 [+], 1560 | mobilization protein | ||
8 | cfxA | 8234..9199 [-], 966 | beta-lactamase | AR | |
9 | - | 9372..10817 [+], 1446 | unknown |
Gene may contribute to site-specific recombination |
Gene may be involved in adaptative function |
(1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361] |
(2) Bellanger X; Payot S; Leblond-Bourget N; Guedon G (2014). Conjugative and mobilizable genomic islands in bacteria: evolution and diversity. FEMS Microbiol Rev. 38(4):720-60. [PudMed:24372381] |
(3) Ferreira LQ; Avelar KE; Vieira JM; de Paula GR; Colombo AP; Domingues RM; Ferreira MC (2007). Association between the cfxA gene and transposon Tn4555 in Bacteroides distasonis strains and other Bacteroides species. Curr Microbiol. 54(5):348-53. [PudMed:17486409] |
(4) Bass KA; Hecht DW (2002). Isolation and characterization of cLV25, a Bacteroides fragilis chromosomal transfer factor resembling multiple Bacteroides sp. mobilizable transposons. J Bacteriol. 184(7):1895-904. [PudMed:11889096] |
(5) Tribble GD; Parker AC; Smith CJ (1997). The Bacteroides mobilizable transposon Tn4555 integrates by a site-specific recombination mechanism similar to that of the gram-positive bacterial element Tn916. J Bacteriol. 179(8):2731-9. [PudMed:9098073] |
(6) Smith CJ; Parker AC (1996). A gene product related to Tral is required for the mobilization of Bacteroides mobilizable transposons and plasmids. Mol Microbiol. 20(4):741-50. [PudMed:8793871] |
(7) Smith CJ; Parker AC (1993). Identification of a circular intermediate in the transfer and transposition of Tn4555, a mobilizable transposon from Bacteroides spp. J Bacteriol. 175(9):2682-91. [PudMed:8386723] |