 ICEberg ID | 2 |
Name  | CTn341  |
| ICEO ID | ICEO_0000100 |
| Organism | Bacteroides fragilis |
| Size (bp) | 51993 |
| GC content [Genome] (%) | 49.49 |
| Insertion site | - |
| Function | Tetracycline resistance |
| Species that ICE can be transferred to | Bacteroides spp. |
| Nucleotide Sequence | AY515263 (complete ICE sequence in this GenBank file) |
| Replicon | - |
| Coordinates | 1..51993 |
| Putative oriT region | - |
| Putative relaxase | coordinates: 19916..21163; Family: MOBP |
The Interaction Network among ICE/IME/CIME | ||||||
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| Detailed Informatioin of the Interaction Network | ||||||
| # | ICE | Inter_Ele [Type] | Methods | Donors | Recipients | Exper_Ref |
| 1 | CTn341 | Tn4555 [IME] | in trans | Bacteroides vulgatus | Escherichia coli | 14702313 |
| This is an interactioin derived from experimental literature |
The graph information of CTn341 components from AY515263 | |||||
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| Complete gene list of CTn341 from AY515263 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | - | 1056..1451 [+], 396 | Ctn001 | ||
| 2 | - | 1465..1893 [+], 429 | Ctn002 | ||
| 3 | - | 1890..3173 [+], 1284 | Ctn003 | ||
| 4 | - | 3702..3950 [+], 249 | Ctn004 | ||
| 5 | yahA | 4004..4312 [+], 309 | YahA | ||
| 6 | - | 4477..5112 [+], 636 | Ctn006 | ||
| 7 | lys | 5185..5712 [-], 528 | Lys | ||
| 8 | traQ | 5709..6215 [-], 507 | TraQ | ||
| 9 | traP | 6234..7112 [-], 879 | TraP | ||
| 10 | traO | 7121..7696 [-], 576 | TraO | ||
| 11 | traN | 7699..8685 [-], 987 | TraN | ||
| 12 | traM | 8754..10103 [-], 1350 | TraM | ||
| 13 | traL | 10084..10392 [-], 309 | TraL | ||
| 14 | traK | 10398..11021 [-], 624 | TraK | ||
| 15 | traJ | 11053..12057 [-], 1005 | TraJ | ||
| 16 | traI | 12061..12690 [-], 630 | TraI | ||
| 17 | traH | 12717..13106 [-], 390 | TraH | ||
| 18 | traG | 13138..15822 [-], 2685 | TraG | ||
| 19 | traF | 15639..15971 [-], 333 | TraF | ||
| 20 | traE | 15982..16293 [-], 312 | TraE | ||
| 21 | traD | 16494..17234 [-], 741 | TraD | ||
| 22 | traC | 17231..17593 [-], 363 | TraC | ||
| 23 | traB | 17617..18066 [-], 450 | TraB | ||
| 24 | traA | 18072..18827 [-], 756 | TraA | ||
| 25 | mobA | 19509..19937 [+], 429 | MobA | ||
| 26 | mobB | 19916..21163 [+], 1248 | MobB | Relaxase, MOBP Family | |
| 27 | mobC | 21194..23212 [+], 2019 | MobC | T4CP | |
| 28 | - | 23344..26598 [-], 3255 | Ctn028 | ||
| 29 | - | 26615..27745 [-], 1131 | Cnt029 | ||
| 30 | rteC | 28047..28700 [-], 654 | RteC | ||
| 31 | - | 28891..29313 [-], 423 | Ctn031 | ||
| 32 | rteB | 29593..30915 [-], 1323 | RteB | ||
| 33 | rteA | 30908..33226 [-], 2319 | RteA | ||
| 34 | tetQ | 33226..35151 [-], 1926 | TetQ | AR | |
| 35 | bmhA | 35809..44073 [-], 8265 | BmhA | ||
| 36 | matR | 38561..40360 [-], 1800 | MatR | ||
| 37 | - | 44063..44650 [-], 588 | Ctn038 | ||
| 38 | exc | 44678..46765 [-], 2088 | Exc | ||
| 39 | - | 46826..48397 [-], 1572 | Ctn040 | ||
| 40 | - | 48418..48768 [-], 351 | Ctn041 | ||
| 41 | - | 48772..49134 [-], 363 | Ctn042 | ||
| 42 | - | 49336..49635 [+], 300 | Ctn043 | ||
| 43 | - | 49750..50001 [+], 252 | Ctn044 | ||
| 44 | rhuM | 50050..50412 [-], 363 | RhuM | ||
| 45 | int | 50424..51659 [-], 1236 | Int | Integrase | |
 Gene may contribute to site-specific recombination |
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(1) Peed L; Parker AC; Smith CJ (2010). Genetic and functional analyses of the mob operon on conjugative transposon CTn341 from Bacteroides spp. J Bacteriol. 192(18):4643-50. [PubMed:20639338]
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(2) Bacic M; Parker AC; Stagg J; Whitley HP; Wells WG; Jacob LA; Smith CJ (2005). Genetic and structural analysis of the Bacteroides conjugative transposon CTn341. J Bacteriol. 187(8):2858-69. [PubMed:15805532]
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(3) Smith CJ; Parker AC; Bacic M (2001). Analysis of a Bacteroides conjugative transposon using a novel "targeted capture" model system. Plasmid. 46(1):47-56. [PubMed:11535035]
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| experimental literature |