 ICEberg ID | 178_IME |
Name  | MGIVflInd1  |
| Family | - |
| Organism | Vibrio fluvialis H-08942 |
| Size (bp) | 23.2 kb |
| GC content [Genome] (%) | |
| Insertion site | 3′ end of yicC |
| Function | - |
| Species that IME can be transferred to | - |
| Nucleotide Sequence | KC117176 (complete IME sequence in this GenBank file) |
| Replicon | - |
| Coordinates | 1..23229 |
| Putative oriT region | - |
| Putative relaxase | - |
The Interaction Network among ICE/IME/CIME/plasmid | ||||||
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| Detailed Informatioin of the Interaction Network | ||||||
| # | IME | Inter_Ele [Type] | Methods | Donors | Recipients | Exper_Ref |
| 1 | MGIVflInd1 | ICEVflInd1 [ICE] | in trans | Vibrio fluvialis; E. coli CAG18439 | Escherichia coli | 20807202; 23204461 |
| 2 | MGIVflInd1 | SXT(MO10) [ICE] | in trans | E. coli AD64 | E. coli CAG18439 | 20807202 |
| This is an interactioin derived from experimental literature |
The graph information of MGIVflInd1 components from KC117176 | |||||
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| Complete gene list of MGIVflInd1 from KC117176 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | int | 340..1590 [+], 1251 | integrase family tyrosine site-specific recombinase | Integrase | |
| 2 | MGIVFLIND1_002 | 1592..1930 [+], 339 | conserved hypothetical protein | ||
| 3 | MGIVFLIND1_003 | 2126..2428 [+], 303 | conserved hypothetical protein | ||
| 4 | MGIVFLIND1_004 | 2460..2831 [+], 372 | helix-turn-helix domain-containing protein | ||
| 5 | MGIVFLIND1_005 | 2857..5265 [+], 2409 | DEAD/DEAH box helicase | ||
| 6 | MGIVFLIND1_006 | 5723..6421 [+], 699 | conserved hypothetical protein | ||
| 7 | MGIVFLIND1_007 | 6672..9914 [-], 3243 | DEAD/DEAH box helicase | ||
| 8 | MGIVFLIND1_008 | 9911..10708 [-], 798 | conserved hypothetical protein | ||
| 9 | hsdS | 10708..11850 [-], 1143 | type I restriction-modification enzyme, specificity subunit | ||
| 10 | hsdM | 11847..13424 [-], 1578 | type I restriction-modification enzyme, methyltransferase subunit | ||
| 11 | hsdR | 13445..15835 [-], 2391 | type I restriction-modification enzyme, restriction subunit | ||
| 12 | MGIVFLIND1_012 | 15837..16034 [-], 198 | VrlI-like protein | ||
| 13 | MGIVFLIND1_013 | 16284..18026 [-], 1743 | hypothetical protein | ||
| 14 | rdfM | 18013..18255 [-], 243 | recombination directionality factor | ||
| 15 | MGIVFLIND1_015 | 18648..19961 [+], 1314 | putative AAA+ ATPase | ||
| 16 | MGIVFLIND1_016 | 20105..21223 [-], 1119 | hypothetical protein | ||
| 17 | MGIVFLIND1_017 | 21278..22627 [-], 1350 | HipA domain-containing protein | ||
| 18 | MGIVFLIND1_018 | 22617..22940 [-], 324 | helix-turn-helix domain transcriptional regulator | ||
 Gene may contribute to site-specific recombination |
| (1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361] |
| (2) Bellanger X; Payot S; Leblond-Bourget N; Guedon G (2014). Conjugative and mobilizable genomic islands in bacteria: evolution and diversity. FEMS Microbiol Rev. 38(4):720-60. [PudMed:24372381] |
(3) Daccord A; Ceccarelli D; Rodrigue S; Burrus V (2013). Comparative analysis of mobilizable genomic islands. J Bacteriol. 195(3):606-14. [PudMed:23204461] 
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(4) Daccord A; Ceccarelli D; Burrus V (2010). Integrating conjugative elements of the SXT/R391 family trigger the excision and drive the mobilization of a new class of Vibrio genomic islands. Mol Microbiol. 78(3):576-88. [PudMed:20807202]
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| experimental literature |
| in silico analysis literature |