ICEberg
I. Information of IME
ICEberg ID13_IME
Name IME_GB00957_oriT This is a predicted IME derived from literature
Family-
OrganismStreptococcus agalactiae
Size (bp)5.2 kb
GC content [Genome] (%)
Insertion site-
Functionlsa(C) (lincosamide, streptogramin A and pleuromutilin)
Species that IME can be transferred to-
Nucleotide Sequence-
Putative oriT region -
Putative relaxase -


II. IME interaction with ICE/CIME/Plasmids

The Interaction Network among ICE/IME/CIME/plasmid


Detailed Informatioin of the Interaction Network
# IME  Inter_Ele [Type] Methods Donors Recipients Exper_Ref 
1IME_GB00957_oriT Tn916 [ICE] insolicoin trans - - -
2IME_GB00957_oriT ICESt3 [ICE] insolicoin trans - - -

insolico This is a putative interactioin

 

The gene information of IME_GB00957_oriT is not available.
ElementNo. of sequencesDownload
Nucleotide sequences0Fasta
Proteins0Fasta
(1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361]
(2) Puymege A; Bertin S; Guedon G; Payot S (2015). Analysis of Streptococcus agalactiae pan-genome for prevalence, diversity and functionality of integrative and conjugative or mobilizable elements integrated in the tRNA(Lys CTT) gene. Mol Genet Genomics. 290(5):1727-40. [PudMed:25832353] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU