ICEberg
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Organism: Providencia rettgeri
#IDICE nameICE familyReplicon
143 experimental R391SXT/R391-
2142 experimental R392SXT/R391-
3143 experimental R397SXT/R391-
4146 experimental R748SXT/R391-
5147 experimental R749SXT/R391-
experimental Data derived from experimental literature
The genome map is not available as this strain has not been completely sequenced.
ElementNo. of sequencesDownloadAlignment
ICEs2Fasta Nucleotide sequence comparison by webACT
Proteins95FastaProtein
(1) Wozniak RA; Fouts DE; Spagnoletti M; Colombo MM; Ceccarelli D; Garriss G; Dery C; Burrus V; Waldor MK (2009). Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 5(12):e1000786. [PudMed:20041216] in_silico
(2) Garriss G; Waldor MK; Burrus V (2009). Mobile antibiotic resistance encoding elements promote their own diversity. PLoS Genet. 5(12):e1000775. [PudMed:20019796] experimental
(3) Bordeleau E; Brouillette E; Robichaud N; Burrus V (2010). Beyond antibiotic resistance: integrating conjugative elements of the SXT/R391 family that encode novel diguanylate cyclases participate to c-di-GMP signalling in Vibrio cholerae. Environ Microbiol. 12(2):510-23. [PudMed:19888998] experimental
(4) Ceccarelli D; Daccord A; Rene M; Burrus V (2008). Identification of the origin of transfer (oriT) and a new gene required for mobilization of the SXT/R391 family of integrating conjugative elements. J Bacteriol. 190(15):5328-38. [PudMed:18539733] experimental
(5) Taviani E; Ceccarelli D; Lazaro N; Bani S; Cappuccinelli P; Colwell RR; Colombo MM (2008). Environmental Vibrio spp., isolated in Mozambique, contain a polymorphic group of integrative conjugative elements and class 1 integrons. FEMS Microbiol Ecol. 64(1):45-54. [PudMed:18318712] experimental
(6) Marrero J; Waldor MK (2007). Determinants of entry exclusion within Eex and TraG are cytoplasmic. J Bacteriol. 189(17):6469-73. [PudMed:17573467] experimental
(7) O'Halloran JA; McGrath BM; Pembroke JT (2007). The orf4 gene of the enterobacterial ICE, R391, encodes a novel UV-inducible recombination directionality factor, Jef, involved in excision and transfer of the ICE. FEMS Microbiol Lett. 272(1):99-105. [PudMed:17504243] experimental
(8) Marrero J; Waldor MK (2007). The SXT/R391 family of integrative conjugative elements is composed of two exclusion groups. J Bacteriol. 189(8):3302-5. [PudMed:17307849] experimental
(9) Mead S; Vaisman A; Valjavec-Gratian M; Karata K; Vandewiele D; Woodgate R (2007). Characterization of polVR391: a Y-family polymerase encoded by rumA'B from the IncJ conjugative transposon, R391. Mol Microbiol. 63(3):797-810. [PudMed:17302804] experimental
(10) Marrero J; Waldor MK (2005). Interactions between inner membrane proteins in donor and recipient cells limit conjugal DNA transfer. Dev Cell. 8(6):963-70. [PudMed:15935784] experimental
(11) McGrath BM; O'Halloran JA; Pembroke JT (2005). Pre-exposure to UV irradiation increases the transfer frequency of the IncJ conjugative transposon-like elements R391, R392, R705, R706, R997 and pMERPH and is recA+ dependent. FEMS Microbiol Lett. 243(2):461-5. [PudMed:15686850] experimental
(12) McGrath BM; Pembroke JT (2004). Detailed analysis of the insertion site of the mobile elements R997, pMERPH, R392, R705 and R391 in E. coli K12. FEMS Microbiol Lett. 237(1):19-26. [PudMed:15268933] experimental
(13) Sabater-Munoz B; van Ham RC; Moya A; Silva FJ; Latorre A (2004). Evolution of the leucine gene cluster in Buchnera aphidicola: insights from chromosomal versions of the cluster. J Bacteriol. 186(9):2646-54. [PudMed:15090505] experimental
(14) Boltner D; Osborn AM (2004). Structural comparison of the integrative and conjugative elements R391, pMERPH, R997, and SXT. Plasmid. 51(1):12-23. [PudMed:14711525] experimental
(15) Boltner D; MacMahon C; Pembroke JT; Strike P; Osborn AM (2002). R391: a conjugative integrating mosaic comprised of phage, plasmid, and transposon elements. J Bacteriol. 184(18):5158-69. [PudMed:12193633] experimental
(16) Hochhut B; Beaber JW; Woodgate R; Waldor MK (2001). Formation of chromosomal tandem arrays of the SXT element and R391, two conjugative chromosomally integrating elements that share an attachment site. J Bacteriol. 183(4):1124-32. [PudMed:11157923] experimental
(17) Murphy DB; Pembroke JT (1999). Monitoring of chromosomal insertions of the IncJ elements R391 and R997 in Escherichia coli K-12. FEMS Microbiol Lett. 174(2):355-61. [PudMed:10339829] experimental
(18) Murphy DB; Pembroke JT (1995). Transfer of the IncJ plasmid R391 to recombination deficient Escherichia coli K12: evidence that R391 behaves as a conjugal transposon. FEMS Microbiol Lett. 134(2-3):153-8. [PudMed:8586262] experimental
(19) Coetzee JN; Datta N; Hedges RW (1972). R factors from Proteus rettgeri. J Gen Microbiol. 72(3):543-52. [PudMed:4564689] experimental
(20) Hedges RW (1974). R factors from Providence. J Gen Microbiol. 81(1):171-81. [PudMed:4362618] experimental
(21) Peters SE; Hobman JL; Strike P; Ritchie DA (1991). Novel mercury resistance determinants carried by IncJ plasmids pMERPH and R391. Mol Gen Genet. 228(1-2):294-9. [PudMed:1886614] experimental
 
experimental experimental literature
in_silico in silico analysis literature