ICEberg

Browse by ICE | Browse by Organism | Browse by ICE family

ICE list
Download&Alignment
Reference

ICE family: TnGBS1
We classified ICE that has significant sequence alignment and syntenic 'core' structure with TnGBS1 into the TnGBS1 family.
#	ID	ICE name	Strain	Replicon
1	160	TnGBS1	Streptococcus agalactiae NEM316	NC_004368
2	161	pNEM316-1 (island VII)	Streptococcus agalactiae NEM316	NC_004368
3	162	pNEM316-1 (island VIII)	Streptococcus agalactiae NEM316	NC_004368
4	872	TnGBS1 a to c	Streptococcus agalactiae NEM316	-
5	873	TnGBS1.2	Streptococcus agalactiae ATCC 13813	-
6	874	TnGBS1.3	Streptococcus agalactiae FSL S3-026	-
7	875	TnGBS1.4 a to b	Streptococcus agalactiae FSL S3-026	-
8	885	TnLsal1.1	Lactococcus salivarius ATCC11741	-
9	886	TnSang1.1	Streptococcus anginosus C1051	-
10	888	TnScanis1.1	Streptococcus canis FSL Z3-227	-
11	892	ICE_Sga43143_TnGBS1	Streptococcus gallolyticus ATCC 43143	-
12	899	TnSinf1.1	Streptococcus infantis SK970	-
13	900	TnSinf1.2	Streptococcus infantis X	-
14	903	ICE_SintJTH08_TnGBS1	Streptococcus intermedius JTH08	-
15	908	TnSpast1.1	Streptococcus pasteurianus ATCC 43144	-
16	910	TnSpneum1.1	Streptococcus pneumoniae GA17328	-
17	911	TnSsang1.1	Streptococcus sanguinis SK1058	-
18	919	TnSsob1.1	Streptococcus sobrinus TCI-54	-
19	920	TnSsob1.2	Streptococcus sobrinus TCI-89	-
20	921	TnSsob1.3	Streptococcus sobrinus TCI-118	-
21	922	TnSsob1.4	Streptococcus sobrinus TCI-342	-
22	923	TnSsob1.5	Streptococcus sobrinus TCI-384	-
23	924	TnSsob1.6	Streptococcus sobrinus TCI-61	-
24	929	TnSsporal1.1	Streptococcus sp. oral taxon 071 str. 73H25AP	-
25	931	TnSspX1.1	Streptococcus sp. 2 1 36FAA	-
26	934	TnSuri1.1	Streptococcus urinalis 2285-97	-
Data derived from experimental literature
Putative ICEs predicted by bioinformatic methods

Element	No. of sequences	Download	Alignment
Proteins	147	Fasta	Multiple protein sequence alignment by MUSCLE online
ICEs	3	Fasta	Nucleotide sequence comparison by webACT

(1) Ambroset C et al. (2015). New Insights into the Classification and Integration Specificity of Streptococcus Integrative Conjugative Elements through Extensive Genome Exploration. Front Microbiol. 1.279861111. [PudMed:26779141]

(2) Raftis EJ et al. (2014). Unusual genome complexity in Lactobacillus salivarius JCM1046. BMC Genomics. 1.160416667. [PudMed:25201645]

(3) Guerillot R et al. (2013). Modular evolution of TnGBSs, a new family of integrative and conjugative elements associating insertion sequence transposition, plasmid replication, and conjugation for their spreading. J Bacteriol. 195(9):1979-90. [PudMed:23435978]

(4) Brochet M et al. (2009). Atypical association of DDE transposition with conjugation specifies a new family of mobile elements. Mol Microbiol. 71(4):948-59. [PudMed:19183283]

(5) Glaser P et al. (2002). Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease. Mol Microbiol. 45(6):1499-513. [PudMed:12354221]

experimental literature

in silico analysis literature