ICEberg
I. Information of ICE
ICEberg ID161
Name pNEM316-1 (island VII) This is a predicted ICE derived from literature
OrganismStreptococcus agalactiae NEM316
Size (bp)47068
GC content [Genome] (%)37.66[35.63]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNC_004368 (complete ICE sequence in this genome)
Replicon chromosome (2211485 bp, BioProject:334) [NC_004368]
Genome coordinates711824..758891 
Putative oriT region -
Putative relaxase coordinates: 723630..725996; Locus tag: gbs0714;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of pNEM316-1 (island VII) is not available.



The graph information of pNEM316-1 (island VII) components from NC_004368
Complete gene list of pNEM316-1 (island VII) from NC_004368
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1gbs0686706888..707907 [+], 1020hypothetical protein
2gbs0687708074..708640 [+], 567hypothetical protein
3gbs0688708689..709339 [-], 651hypothetical protein
4gbs0689709351..710046 [-], 696hypothetical protein
5gbs0690710059..710859 [-], 801hypothetical protein
6gbs0691710871..711626 [-], 756hypothetical protein
7gbs0692711937..712125 [+], 189hypothetical protein
8gbs0693712162..712656 [+], 495hypothetical protein
9gbs0694712667..712996 [+], 330hypothetical protein
10gbs0695713002..713094 [+], 93hypothetical protein
11gbs0696713100..713219 [+], 120hypothetical protein
12gbs0697713212..713439 [+], 228hypothetical protein
13gbs0698713452..714945 [+], 1494hypothetical protein
14gbs0699715201..715404 [+], 204hypothetical protein
15gbs0700715416..715844 [+], 429hypothetical protein
16gbs0701715844..716290 [+], 447hypothetical protein
17gbs0702716480..716929 [+], 450hypothetical protein
18gbs0703716922..717332 [+], 411hypothetical protein
19gbs0704717483..717653 [+], 171hypothetical protein
20gbs0705717668..717916 [+], 249hypothetical protein
21gbs0706717909..718865 [-], 957hypothetical protein
22gbs0707718944..719948 [+], 1005hypothetical protein
23gbs0708720004..720852 [+], 849hypothetical protein
24gbs0709720975..721250 [+], 276hypothetical protein
25gbs0710721644..721961 [+], 318hypothetical protein
26gbs0711721954..722301 [+], 348hypothetical protein
27gbs0712722301..723101 [+], 801hypothetical protein
28gbs0713723118..723576 [+], 459hypothetical protein
29gbs0714723630..725996 [+], 2367hypothetical proteinRelaxase, MOBL Family
30gbs0715726122..726379 [+], 258hypothetical protein
31gbs0716726398..731128 [+], 4731hypothetical protein
32gbs0717731311..733059 [+], 1749hypothetical protein
33gbs0718733061..734893 [+], 1833hypothetical protein
34gbs0719734985..735332 [+], 348hypothetical protein
35gbs0720735343..736425 [+], 1083hypothetical protein
36gbs0721736440..738701 [+], 2262hypothetical proteinPrgA, T4SS component 
37gbs0722738778..739500 [+], 723hypothetical proteinPrgC, T4SS component 
38gbs0723739552..742353 [+], 2802hypothetical proteinPrgB, T4SS component 
39gbs0724742525..742956 [+], 432hypothetical protein
40gbs0725743184..743441 [+], 258hypothetical protein
41gbs0726743434..746583 [+], 3150hypothetical proteinT4CP 
42gbs0727746683..747165 [+], 483hypothetical protein
43gbs0728747285..749492 [+], 2208hypothetical protein
44gbs0729749549..749782 [+], 234hypothetical protein
45gbs0730750013..750318 [+], 306hypothetical protein
46gbs0731750318..750965 [+], 648hypothetical protein
47gbs0732750975..752924 [+], 1950hypothetical protein
48gbs0733752944..753201 [+], 258hypothetical protein
49gbs0734753215..754552 [+], 1338hypothetical protein
50gbs0735754566..755150 [+], 585hypothetical protein
51gbs0736755289..756107 [+], 819hypothetical protein
52gbs0737756104..756382 [+], 279hypothetical protein
53gbs0738756395..756778 [+], 384hypothetical protein
54gbs0739756783..757094 [+], 312hypothetical protein
55gbs0740757228..758556 [+], 1329hypothetical proteinIntegrase 
56gbs0741759044..759754 [+], 711DNA-binding response regulator
57gbs0742759747..761096 [+], 1350sensory box histidine kinase
58gbs0743761100..761909 [+], 810hypothetical protein
59gbs0744761912..762280 [+], 369hypothetical protein
60rnc762456..763142 [+], 687ribonuclease III
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins49Fasta
(1) Brochet M; Da Cunha V; Couve E; Rusniok C; Trieu-Cuot P; Glaser P (2009). Atypical association of DDE transposition with conjugation specifies a new family of mobile elements. Mol Microbiol. 71(4):948-59. [PubMed:19183283] experimental
 
experimental experimental literature

Genomics & Bioinformatics Group in MML, SJTU