ICEberg

ICE
Gene list
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References

I. Information of ICE

ICEberg ID	160
Name	TnGBS1
ICEO ID	ICEO_0000124
Organism	Streptococcus agalactiae NEM316
Size (bp)	47068
GC content [Genome] (%)	37.66[35.63]
Insertion site	-
Function	-
Species that ICE can be transferred to	-
Nucleotide Sequence	NC_004368 (complete ICE sequence in this genome)
Replicon	chromosome (2211485 bp, BioProject:334) [NC_004368]
Genome coordinates	385757..432824
Putative oriT region	-
Putative relaxase	coordinates: 397563..399929; Locus tag: gbs0384; Family: MOB_L

II. ICE interaction with IME/CIME/

The interaction information of TnGBS1 is not available.

The graph information of TnGBS1 components from NC_004368

Complete gene list of TnGBS1 from NC_004368
#	Gene	Coordinates [+/-], size (bp)	Product (GenBank annotation)	*Reannotation
1	gbs0355	380779..382086 [+], 1308	hypothetical protein
2	gbs0356	382150..382446 [-], 297	hypothetical protein
3	gbs0357	382443..382862 [-], 420	HIT family protein
4	gbs0358	383198..383701 [+], 504	hypothetical protein
5	gbs0359	384010..384735 [+], 726	ABC transporter ATP-binding protein
6	gbs0360	384737..385777 [+], 1041	hypothetical protein
7	gbs0361	385870..386058 [+], 189	hypothetical protein
8	gbs0362	386095..386589 [+], 495	hypothetical protein
9	gbs0363	386600..386929 [+], 330	hypothetical protein
10	gbs0364	386848..387027 [+], 180	hypothetical protein
11	gbs0365	387033..387152 [+], 120	hypothetical protein
12	gbs0366	387145..387372 [+], 228	hypothetical protein
13	gbs0367	387385..388878 [+], 1494	hypothetical protein
14	gbs0369	389134..389337 [+], 204	hypothetical protein
15	gbs0370	389349..389777 [+], 429	hypothetical protein
16	gbs0371	389777..390223 [+], 447	hypothetical protein
17	gbs0372	390413..390862 [+], 450	hypothetical protein
18	gbs0373	390855..391265 [+], 411	hypothetical protein
19	gbs0374	391443..391586 [+], 144	hypothetical protein
20	gbs0375	391601..391849 [+], 249	hypothetical protein
21	gbs0376	391842..392798 [-], 957	hypothetical protein
22	gbs0377	392877..393881 [+], 1005	hypothetical protein
23	gbs0378	393937..394785 [+], 849	hypothetical protein
24	gbs0379	394908..395183 [+], 276	hypothetical protein
25	gbs0380	395577..395894 [+], 318	hypothetical protein
26	gbs0381	395887..396234 [+], 348	hypothetical protein
27	gbs0382	396234..397034 [+], 801	hypothetical protein
28	gbs0383	397051..397509 [+], 459	hypothetical protein
29	gbs0384	397563..399929 [+], 2367	hypothetical protein	Relaxase, MOB_L Family
30	gbs0385	400055..400312 [+], 258	hypothetical protein
31	gbs0386	400331..405061 [+], 4731	hypothetical protein
32	gbs0387	405244..406992 [+], 1749	hypothetical protein
33	gbs0388	406994..408826 [+], 1833	hypothetical protein
34	gbs0389	408918..409265 [+], 348	hypothetical protein
35	gbs0390	409276..410358 [+], 1083	hypothetical protein
36	gbs0391	410373..412634 [+], 2262	hypothetical protein	PrgA, T4SS component
37	gbs0392	412711..413433 [+], 723	hypothetical protein	PrgC, T4SS component
38	gbs0393	413485..416286 [+], 2802	hypothetical protein	PrgB, T4SS component
39	gbs0394	416458..416889 [+], 432	hypothetical protein
40	gbs0395	417117..417374 [+], 258	hypothetical protein
41	gbs0396	417367..420516 [+], 3150	hypothetical protein	T4CP
42	gbs0397	420616..421098 [+], 483	hypothetical protein
43	gbs0398	421218..423425 [+], 2208	hypothetical protein
44	gbs0399	423482..423715 [+], 234	hypothetical protein
45	gbs0400	423946..424251 [+], 306	hypothetical protein
46	gbs0401	424251..424898 [+], 648	hypothetical protein
47	gbs0402	424908..426857 [+], 1950	hypothetical protein
48	gbs0403	426877..427134 [+], 258	hypothetical protein
49	gbs0404	427148..428485 [+], 1338	hypothetical protein
50	gbs0405	428499..429083 [+], 585	hypothetical protein
51	gbs0406	429222..430040 [+], 819	hypothetical protein
52	gbs0407	430037..430315 [+], 279	hypothetical protein
53	gbs0408	430328..430711 [+], 384	hypothetical protein
54	gbs0409	430716..431027 [+], 312	hypothetical protein
55	gbs0410	431161..432489 [+], 1329	hypothetical protein	Integrase
56	gbs0411	432906..433706 [+], 801	hypothetical protein
57	trmB	433696..434331 [+], 636	tRNA (guanine-N(7)-)-methyltransferase
58	gbs0413	434818..435297 [+], 480	hypothetical protein
59	nusA	435333..436484 [+], 1152	transcription elongation factor NusA
60	gbs0415	436506..436802 [+], 297	hypothetical protein
61	gbs0416	436795..437097 [+], 303	hypothetical protein

Flanking regions

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	49	Fasta

(1) Brochet M; Da Cunha V; Couve E; Rusniok C; Trieu-Cuot P; Glaser P (2009). Atypical association of DDE transposition with conjugation specifies a new family of mobile elements. Mol Microbiol. 71(4):948-59. [PubMed:19183283]

(2) Glaser P; Rusniok C; Buchrieser C; Chevalier F; Frangeul L; Msadek T; Zouine M; Couve E; Lalioui L; Poyart C; Trieu-Cuot P; Kunst F (2002). Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease. Mol Microbiol. 45(6):1499-513. [PubMed:12354221]

experimental literature