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oriTfinder2
a web-based tool for the identification of origin-of-transfer regions in DNA sequences of bacterial mobile genetic elements
Query MGE genome
Upload a
GenBank
file containing one nucleotide sequence and annotation format
Example
Upload a nucleotide sequence file in the
FASTA
format
Example
Subject dataset
Conjugative modules:
Origin region of DNA transfer (
oriT
)
Relaxase
Auxiliary protein
Type IV coupling protein (T4CP)
Type IV secretion system (T4SS)
BLAST E-value:
0.00001
0.0001
0.001
0.01
0.1
1
HMMER E-value for Relaxase and T4CP detection:
0.000001
0.00001
0.0001
0.001
Accessory modules:
Antibiotic Resistance Gene (ARG)
Virulence Factor (VF)
Metal Resistance Gene
Degradation Gene
Symbiosis Gene
Anti-CRISPR
BLASTp
H
a
-value
:
0.21
0.24
0.30
0.42
0.64
0.72
0.81
Run an example
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