T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 9950..50928
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PDQ35_RS23870 (PDQ35_23870) | 7666..9957 | - | 2292 | WP_001289276 | F-type conjugative transfer protein TrbC | - |
| PDQ35_RS23875 (PDQ35_23875) | 9950..11020 | - | 1071 | WP_000151583 | IncI1-type conjugal transfer protein TrbB | trbB |
| PDQ35_RS23880 (PDQ35_23880) | 11039..12247 | - | 1209 | WP_000121273 | IncI1-type conjugal transfer protein TrbA | trbA |
| PDQ35_RS23885 (PDQ35_23885) | 12539..12691 | + | 153 | WP_001331364 | Hok/Gef family protein | - |
| PDQ35_RS23890 (PDQ35_23890) | 12763..13014 | - | 252 | WP_001291964 | hypothetical protein | - |
| PDQ35_RS26660 | 13513..13608 | + | 96 | WP_001303310 | DinQ-like type I toxin DqlB | - |
| PDQ35_RS23900 (PDQ35_23900) | 13673..13849 | - | 177 | WP_001054904 | hypothetical protein | - |
| PDQ35_RS23905 (PDQ35_23905) | 14241..14450 | + | 210 | WP_000062603 | HEAT repeat domain-containing protein | - |
| PDQ35_RS23910 (PDQ35_23910) | 14522..15172 | - | 651 | WP_001178506 | plasmid IncI1-type surface exclusion protein ExcA | - |
| PDQ35_RS23915 (PDQ35_23915) | 15246..17414 | - | 2169 | WP_021537350 | DotA/TraY family protein | traY |
| PDQ35_RS23920 (PDQ35_23920) | 17511..18095 | - | 585 | WP_001037987 | IncI1-type conjugal transfer protein TraX | - |
| PDQ35_RS23925 (PDQ35_23925) | 18124..19326 | - | 1203 | WP_001189160 | IncI1-type conjugal transfer protein TraW | traW |
| PDQ35_RS23930 (PDQ35_23930) | 19293..19907 | - | 615 | WP_000337398 | IncI1-type conjugal transfer protein TraV | traV |
| PDQ35_RS23935 (PDQ35_23935) | 19907..22951 | - | 3045 | WP_021265678 | IncI1-type conjugal transfer protein TraU | traU |
| PDQ35_RS23940 (PDQ35_23940) | 23041..23841 | - | 801 | WP_001164788 | IncI1-type conjugal transfer protein TraT | traT |
| PDQ35_RS23945 (PDQ35_23945) | 23825..24013 | - | 189 | WP_001277255 | putative conjugal transfer protein TraS | - |
| PDQ35_RS23950 (PDQ35_23950) | 24077..24481 | - | 405 | WP_000086958 | IncI1-type conjugal transfer protein TraR | traR |
| PDQ35_RS23955 (PDQ35_23955) | 24532..25059 | - | 528 | WP_001055569 | conjugal transfer protein TraQ | traQ |
| PDQ35_RS23960 (PDQ35_23960) | 25059..25763 | - | 705 | WP_000801920 | IncI1-type conjugal transfer protein TraP | traP |
| PDQ35_RS23965 (PDQ35_23965) | 25763..27052 | - | 1290 | WP_001272003 | conjugal transfer protein TraO | traO |
| PDQ35_RS23970 (PDQ35_23970) | 27055..28038 | - | 984 | WP_001191877 | IncI1-type conjugal transfer protein TraN | traN |
| PDQ35_RS23975 (PDQ35_23975) | 28049..28741 | - | 693 | WP_000138550 | DotI/IcmL family type IV secretion protein | traM |
| PDQ35_RS23980 (PDQ35_23980) | 28738..29085 | - | 348 | WP_001055900 | conjugal transfer protein | traL |
| PDQ35_RS23985 (PDQ35_23985) | 29103..32870 | - | 3768 | WP_001141527 | LPD7 domain-containing protein | - |
| PDQ35_RS23990 (PDQ35_23990) | 32959..33510 | - | 552 | WP_000014583 | phospholipase D family protein | - |
| PDQ35_RS23995 (PDQ35_23995) | 33525..33815 | - | 291 | WP_001299214 | hypothetical protein | traK |
| PDQ35_RS24000 (PDQ35_24000) | 33812..34960 | - | 1149 | WP_001024972 | plasmid transfer ATPase TraJ | virB11 |
| PDQ35_RS24005 (PDQ35_24005) | 34957..35775 | - | 819 | WP_000646098 | IncI1-type conjugal transfer lipoprotein TraI | traI |
| PDQ35_RS24010 (PDQ35_24010) | 35772..36230 | - | 459 | WP_001079808 | IncI1-type conjugal transfer lipoprotein TraH | - |
| PDQ35_RS24015 (PDQ35_24015) | 36625..37209 | - | 585 | WP_000977522 | histidine phosphatase family protein | - |
| PDQ35_RS24020 (PDQ35_24020) | 37269..38471 | - | 1203 | WP_000976351 | conjugal transfer protein TraF | - |
| PDQ35_RS24025 (PDQ35_24025) | 38556..39380 | - | 825 | WP_001238939 | conjugal transfer protein TraE | traE |
| PDQ35_RS24030 (PDQ35_24030) | 39531..40685 | - | 1155 | WP_001139957 | site-specific integrase | - |
| PDQ35_RS24035 (PDQ35_24035) | 40979..42241 | + | 1263 | WP_000608644 | IS1380-like element ISEcp1 family transposase | - |
| PDQ35_RS24040 (PDQ35_24040) | 42529..43404 | + | 876 | WP_013188473 | extended-spectrum class A beta-lactamase CTX-M-1 | - |
| PDQ35_RS24045 (PDQ35_24045) | 43451..43795 | - | 345 | Protein_46 | WbuC family cupin fold metalloprotein | - |
| PDQ35_RS24050 (PDQ35_24050) | 43795..44004 | + | 210 | Protein_47 | hypothetical protein | - |
| PDQ35_RS26665 | 44780..45001 | + | 222 | Protein_48 | prepilin | - |
| PDQ35_RS24055 (PDQ35_24055) | 44998..46422 | - | 1425 | WP_001389385 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| PDQ35_RS24060 (PDQ35_24060) | 46422..47078 | - | 657 | WP_001193553 | prepilin peptidase | - |
| PDQ35_RS24065 (PDQ35_24065) | 47063..47623 | - | 561 | WP_000014116 | lytic transglycosylase domain-containing protein | virB1 |
| PDQ35_RS24070 (PDQ35_24070) | 47633..48247 | - | 615 | WP_000959785 | type 4 pilus major pilin | - |
| PDQ35_RS24075 (PDQ35_24075) | 48265..49362 | - | 1098 | WP_001208805 | type II secretion system F family protein | - |
| PDQ35_RS24080 (PDQ35_24080) | 49375..50928 | - | 1554 | WP_000362202 | ATPase, T2SS/T4P/T4SS family | virB11 |
| PDQ35_RS24085 (PDQ35_24085) | 50939..51391 | - | 453 | WP_001247336 | type IV pilus biogenesis protein PilP | - |
| PDQ35_RS24090 (PDQ35_24090) | 51378..52673 | - | 1296 | WP_000752774 | type 4b pilus protein PilO2 | - |
| PDQ35_RS24095 (PDQ35_24095) | 52666..54348 | - | 1683 | WP_000748143 | PilN family type IVB pilus formation outer membrane protein | - |
| PDQ35_RS24100 (PDQ35_24100) | 54362..54799 | - | 438 | WP_000539807 | type IV pilus biogenesis protein PilM | - |
| PDQ35_RS24105 (PDQ35_24105) | 54799..55866 | - | 1068 | WP_000742600 | type IV pilus biogenesis lipoprotein PilL | - |