T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 15386..35468
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R2X28_RS00080 (R2X28_00080) | 11231..12664 | - | 1434 | WP_001288432 | DNA cytosine methyltransferase | - |
| R2X28_RS00085 (R2X28_00085) | 12763..13035 | + | 273 | Protein_13 | IS1 family transposase | - |
| R2X28_RS00090 (R2X28_00090) | 13046..13252 | - | 207 | WP_001749967 | hypothetical protein | - |
| R2X28_RS00095 (R2X28_00095) | 13257..13904 | - | 648 | WP_015344958 | restriction endonuclease | - |
| R2X28_RS00100 (R2X28_00100) | 13954..14265 | - | 312 | WP_001452736 | hypothetical protein | - |
| R2X28_RS00105 (R2X28_00105) | 14301..14615 | - | 315 | WP_001749965 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| R2X28_RS00110 (R2X28_00110) | 14612..14956 | - | 345 | WP_001749964 | hypothetical protein | - |
| R2X28_RS00115 (R2X28_00115) | 14972..15343 | - | 372 | WP_011867773 | H-NS family nucleoid-associated regulatory protein | - |
| R2X28_RS00120 (R2X28_00120) | 15386..16120 | + | 735 | WP_001749963 | lytic transglycosylase domain-containing protein | virB1 |
| R2X28_RS00125 (R2X28_00125) | 16129..16410 | + | 282 | WP_000440698 | transcriptional repressor KorA | - |
| R2X28_RS00130 (R2X28_00130) | 16420..16713 | + | 294 | WP_001749962 | hypothetical protein | virB2 |
| R2X28_RS00135 (R2X28_00135) | 16763..17080 | + | 318 | WP_000496058 | VirB3 family type IV secretion system protein | virB3 |
| R2X28_RS00140 (R2X28_00140) | 17080..19680 | + | 2601 | WP_001749961 | VirB4 family type IV secretion/conjugal transfer ATPase | virb4 |
| R2X28_RS00145 (R2X28_00145) | 19698..20411 | + | 714 | WP_001749960 | type IV secretion system protein | virB5 |
| R2X28_RS00150 (R2X28_00150) | 20419..20646 | + | 228 | WP_001749959 | IncN-type entry exclusion lipoprotein EexN | - |
| R2X28_RS00155 (R2X28_00155) | 20662..21702 | + | 1041 | WP_001749958 | type IV secretion system protein | virB6 |
| R2X28_RS00160 (R2X28_00160) | 21785..21931 | + | 147 | WP_001257173 | conjugal transfer protein TraN | - |
| R2X28_RS00165 (R2X28_00165) | 21921..22619 | + | 699 | WP_000646594 | virB8 family protein | virB8 |
| R2X28_RS00170 (R2X28_00170) | 22630..23514 | + | 885 | WP_000735066 | TrbG/VirB9 family P-type conjugative transfer protein | virB9 |
| R2X28_RS00175 (R2X28_00175) | 23514..24674 | + | 1161 | WP_000101710 | type IV secretion system protein VirB10 | virB10 |
| R2X28_RS00180 (R2X28_00180) | 24716..25711 | + | 996 | WP_000128596 | ATPase, T2SS/T4P/T4SS family | virB11 |
| R2X28_RS00185 (R2X28_00185) | 25711..26244 | + | 534 | WP_000792636 | phospholipase D family protein | - |
| R2X28_RS00190 (R2X28_00190) | 26418..26705 | - | 288 | Protein_34 | DUF6710 family protein | - |
| R2X28_RS00195 (R2X28_00195) | 26972..27151 | + | 180 | Protein_35 | helix-turn-helix domain-containing protein | - |
| R2X28_RS00200 (R2X28_00200) | 27216..27920 | + | 705 | WP_001067855 | IS6-like element IS26 family transposase | - |
| R2X28_RS00205 (R2X28_00205) | 27974..28605 | - | 632 | Protein_37 | transposase | - |
| R2X28_RS00210 (R2X28_00210) | 29000..29656 | + | 657 | WP_001516695 | quinolone resistance pentapeptide repeat protein QnrS1 | - |
| R2X28_RS00215 (R2X28_00215) | 29975..30589 | - | 615 | WP_014839983 | recombinase family protein | - |
| R2X28_RS00220 (R2X28_00220) | 30751..30933 | + | 183 | Protein_40 | DUF4158 domain-containing protein | - |
| R2X28_RS00225 (R2X28_00225) | 31069..31614 | + | 546 | WP_001493763 | plasmid pRiA4b ORF-3 family protein | - |
| R2X28_RS00230 (R2X28_00230) | 31751..32323 | + | 573 | WP_001493762 | recombinase family protein | - |
| R2X28_RS00235 (R2X28_00235) | 32360..33751 | + | 1392 | WP_014839878 | ISKra4-like element ISKpn19 family transposase | - |
| R2X28_RS00240 (R2X28_00240) | 33715..33939 | - | 225 | WP_284246358 | relaxase domain-containing protein | - |
| R2X28_RS00245 (R2X28_00245) | 33939..35468 | - | 1530 | WP_000342688 | type IV secretion system DNA-binding domain-containing protein | virb4 |
| R2X28_RS00250 (R2X28_00250) | 35470..35760 | - | 291 | WP_000706094 | hypothetical protein | - |
| R2X28_RS00255 (R2X28_00255) | 36377..36796 | + | 420 | WP_001749974 | plasmid stabilization protein StbA | - |
| R2X28_RS00260 (R2X28_00260) | 36805..37521 | + | 717 | WP_001749973 | StbB family protein | - |
| R2X28_RS00265 (R2X28_00265) | 37523..37891 | + | 369 | WP_000414913 | plasmid stabilization protein StbC | - |
| R2X28_RS00270 (R2X28_00270) | 38073..38417 | + | 345 | WP_000999874 | hypothetical protein | - |
| R2X28_RS00275 (R2X28_00275) | 38528..38848 | - | 321 | WP_001749971 | protein CcgAII | - |
| R2X28_RS00280 (R2X28_00280) | 38903..39082 | - | 180 | WP_000214483 | protein CcgAI | - |
| R2X28_RS00285 (R2X28_00285) | 39809..40318 | - | 510 | WP_000129958 | antirestriction protein ArdA | - |