T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 65761..109450
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DOE58_RS24385 (DOE58_24370) | 63477..65768 | - | 2292 | WP_072800778 | F-type conjugative transfer protein TrbC | - |
| DOE58_RS24390 (DOE58_24375) | 65761..66831 | - | 1071 | WP_052895276 | IncI1-type conjugal transfer protein TrbB | trbB |
| DOE58_RS24395 (DOE58_24380) | 66850..68058 | - | 1209 | WP_000121273 | IncI1-type conjugal transfer protein TrbA | trbA |
| DOE58_RS24400 (DOE58_24385) | 68426..69766 | + | 1341 | WP_001597880 | IS1202-like element ISEsa1 family transposase | - |
| DOE58_RS24410 (DOE58_24395) | 70203..70535 | - | 333 | WP_001317460 | FlxA-like family protein | - |
| DOE58_RS24415 (DOE58_24400) | 70738..71043 | - | 306 | WP_001326990 | protein YdfV | - |
| DOE58_RS24420 (DOE58_24405) | 71068..71307 | + | 240 | WP_000534858 | type II toxin-antitoxin system antitoxin RelB | - |
| DOE58_RS24425 (DOE58_24410) | 71307..71594 | + | 288 | WP_000323025 | type II toxin-antitoxin system mRNA interferase RelE | - |
| DOE58_RS24430 (DOE58_24415) | 71666..71818 | + | 153 | WP_001303307 | Hok/Gef family protein | - |
| DOE58_RS24435 (DOE58_24420) | 71890..72141 | - | 252 | WP_001291965 | hypothetical protein | - |
| DOE58_RS25440 | 73259..73354 | + | 96 | WP_001303310 | DinQ-like type I toxin DqlB | - |
| DOE58_RS25030 (DOE58_24435) | 73419..73556 | - | 138 | WP_049290858 | hypothetical protein | - |
| DOE58_RS24455 (DOE58_24440) | 73601..74827 | - | 1227 | WP_052895285 | RNA-guided endonuclease TnpB family protein | - |
| DOE58_RS24460 (DOE58_24445) | 75469..75678 | + | 210 | WP_052895278 | HEAT repeat domain-containing protein | - |
| DOE58_RS24465 (DOE58_24450) | 75750..76412 | - | 663 | WP_052895279 | plasmid IncI1-type surface exclusion protein ExcA | - |
| DOE58_RS24470 (DOE58_24455) | 76483..78654 | - | 2172 | WP_052895280 | DotA/TraY family protein | traY |
| DOE58_RS24475 (DOE58_24460) | 78751..79335 | - | 585 | WP_021013262 | IncI1-type conjugal transfer protein TraX | - |
| DOE58_RS24480 (DOE58_24465) | 79364..80566 | - | 1203 | WP_001690627 | IncI1-type conjugal transfer protein TraW | traW |
| DOE58_RS24485 (DOE58_24470) | 80533..81147 | - | 615 | WP_000337399 | IncI1-type conjugal transfer protein TraV | traV |
| DOE58_RS24490 (DOE58_24475) | 81147..84191 | - | 3045 | WP_052895281 | IncI1-type conjugal transfer protein TraU | traU |
| DOE58_RS24495 (DOE58_24480) | 84281..85081 | - | 801 | WP_001164788 | IncI1-type conjugal transfer protein TraT | traT |
| DOE58_RS24500 (DOE58_24485) | 85065..85253 | - | 189 | WP_052895282 | putative conjugal transfer protein TraS | - |
| DOE58_RS24505 (DOE58_24490) | 85317..85721 | - | 405 | WP_000086960 | IncI1-type conjugal transfer protein TraR | traR |
| DOE58_RS24510 (DOE58_24495) | 85772..86299 | - | 528 | WP_001055569 | conjugal transfer protein TraQ | traQ |
| DOE58_RS24515 (DOE58_24500) | 86299..87003 | - | 705 | WP_000801920 | IncI1-type conjugal transfer protein TraP | traP |
| DOE58_RS24520 (DOE58_24505) | 87003..88292 | - | 1290 | WP_001271995 | conjugal transfer protein TraO | traO |
| DOE58_RS24525 (DOE58_24510) | 88295..89278 | - | 984 | WP_001191877 | IncI1-type conjugal transfer protein TraN | traN |
| DOE58_RS24530 (DOE58_24515) | 89289..89981 | - | 693 | WP_000138550 | DotI/IcmL family type IV secretion protein | traM |
| DOE58_RS24535 (DOE58_24520) | 89978..90325 | - | 348 | WP_001055900 | conjugal transfer protein | traL |
| DOE58_RS24540 (DOE58_24525) | 90343..94110 | - | 3768 | WP_052895283 | LPD7 domain-containing protein | - |
| DOE58_RS24545 (DOE58_24530) | 94200..94667 | - | 468 | WP_114050539 | phospholipase D family protein | - |
| DOE58_RS24550 (DOE58_24535) | 94786..96014 | + | 1229 | WP_103758541 | IS3-like element IS2 family transposase | - |
| DOE58_RS24555 (DOE58_24540) | 96101..96391 | - | 291 | WP_001314267 | hypothetical protein | traK |
| DOE58_RS24560 (DOE58_24545) | 96388..97536 | - | 1149 | WP_001024972 | plasmid transfer ATPase TraJ | virB11 |
| DOE58_RS24565 (DOE58_24550) | 97533..98351 | - | 819 | WP_032310251 | IncI1-type conjugal transfer lipoprotein TraI | traI |
| DOE58_RS24570 (DOE58_24555) | 98348..98806 | - | 459 | WP_001079808 | IncI1-type conjugal transfer lipoprotein TraH | - |
| DOE58_RS24575 (DOE58_24560) | 99201..99785 | - | 585 | WP_000977522 | histidine phosphatase family protein | - |
| DOE58_RS24580 (DOE58_24565) | 99845..101047 | - | 1203 | WP_000976353 | conjugal transfer protein TraF | - |
| DOE58_RS24585 (DOE58_24570) | 101133..101957 | - | 825 | WP_001545755 | conjugal transfer protein TraE | traE |
| DOE58_RS24590 (DOE58_24575) | 102108..103262 | - | 1155 | WP_052895294 | tyrosine-type recombinase/integrase | - |
| DOE58_RS25445 (DOE58_24580) | 103303..103536 | + | 234 | Protein_112 | prepilin | - |
| DOE58_RS24600 (DOE58_24585) | 103533..104969 | - | 1437 | WP_181823317 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| DOE58_RS24605 (DOE58_24590) | 104957..105613 | - | 657 | WP_001193549 | A24 family peptidase | - |
| DOE58_RS24610 (DOE58_24595) | 105598..106158 | - | 561 | WP_000014005 | lytic transglycosylase domain-containing protein | virB1 |
| DOE58_RS24615 (DOE58_24600) | 106168..106782 | - | 615 | WP_000908226 | type 4 pilus major pilin | - |
| DOE58_RS24620 (DOE58_24605) | 106799..107884 | - | 1086 | WP_001208802 | type II secretion system F family protein | - |
| DOE58_RS24625 (DOE58_24610) | 107897..109450 | - | 1554 | WP_000362206 | GspE/PulE family protein | virB11 |
| DOE58_RS24630 (DOE58_24615) | 109461..109913 | - | 453 | WP_001247337 | type IV pilus biogenesis protein PilP | - |
| DOE58_RS24635 (DOE58_24620) | 109900..111195 | - | 1296 | WP_058799196 | type 4b pilus protein PilO2 | - |
| DOE58_RS24640 (DOE58_24625) | 111188..112870 | - | 1683 | WP_000748143 | PilN family type IVB pilus formation outer membrane protein | - |
| DOE58_RS24645 (DOE58_24630) | 112884..113321 | - | 438 | WP_000539807 | type IV pilus biogenesis protein PilM | - |
| DOE58_RS24650 (DOE58_24635) | 113321..114388 | - | 1068 | WP_001360287 | type IV pilus biogenesis lipoprotein PilL | - |