T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 43666..83168
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RI193_RS00270 (pCL053-1_00050) | 41382..43673 | - | 2292 | WP_012783931 | F-type conjugative transfer protein TrbC | - |
| RI193_RS00275 (pCL053-1_00051) | 43666..44736 | - | 1071 | WP_031942445 | IncI1-type conjugal transfer protein TrbB | trbB |
| RI193_RS00280 (pCL053-1_00052) | 44755..45963 | - | 1209 | WP_001703845 | IncI1-type conjugal transfer protein TrbA | trbA |
| RI193_RS00285 (pCL053-1_00053) | 46269..47048 | - | 780 | WP_275542888 | protein FinQ | - |
| RI193_RS00290 (pCL053-1_00054) | 47675..47827 | + | 153 | WP_001331364 | Hok/Gef family protein | - |
| RI193_RS00295 (pCL053-1_00055) | 47899..48150 | - | 252 | WP_001291964 | hypothetical protein | - |
| RI193_RS00300 | 48651..48746 | + | 96 | WP_000609148 | DinQ-like type I toxin DqlB | - |
| RI193_RS00305 (pCL053-1_00057) | 48811..49053 | - | 243 | WP_001420340 | hypothetical protein | - |
| RI193_RS00310 (pCL053-1_00058) | 49170..49379 | - | 210 | WP_001140543 | hemolysin expression modulator Hha | - |
| RI193_RS00315 (pCL053-1_00059) | 49477..50091 | - | 615 | WP_000578648 | plasmid IncI1-type surface exclusion protein ExcA | - |
| RI193_RS00320 (pCL053-1_00060) | 50167..52335 | - | 2169 | WP_031942447 | IncI1-type conjugal transfer membrane protein TraY | traY |
| RI193_RS00325 (pCL053-1_00061) | 52432..53016 | - | 585 | WP_001037987 | IncI1-type conjugal transfer protein TraX | - |
| RI193_RS00330 (pCL053-1_00062) | 53045..54247 | - | 1203 | WP_031942448 | IncI1-type conjugal transfer protein TraW | traW |
| RI193_RS00335 (pCL053-1_00063) | 54214..54828 | - | 615 | WP_031942449 | IncI1-type conjugal transfer protein TraV | traV |
| RI193_RS00340 (pCL053-1_00064) | 54828..57872 | - | 3045 | WP_001024789 | IncI1-type conjugal transfer protein TraU | traU |
| RI193_RS00345 (pCL053-1_00065) | 57962..58762 | - | 801 | WP_001164783 | IncI1-type conjugal transfer protein TraT | traT |
| RI193_RS00350 (pCL053-1_00066) | 58746..58934 | - | 189 | WP_001277253 | putative conjugal transfer protein TraS | - |
| RI193_RS00355 (pCL053-1_00067) | 58998..59402 | - | 405 | WP_000086965 | IncI1-type conjugal transfer protein TraR | traR |
| RI193_RS00360 (pCL053-1_00068) | 59453..59980 | - | 528 | WP_001055569 | conjugal transfer protein TraQ | traQ |
| RI193_RS00365 (pCL053-1_00069) | 59980..60684 | - | 705 | WP_000801920 | IncI1-type conjugal transfer protein TraP | traP |
| RI193_RS00370 (pCL053-1_00070) | 60684..61973 | - | 1290 | WP_001271994 | conjugal transfer protein TraO | traO |
| RI193_RS00375 (pCL053-1_00071) | 61976..62959 | - | 984 | WP_001191879 | IncI1-type conjugal transfer protein TraN | traN |
| RI193_RS00380 (pCL053-1_00072) | 62970..63662 | - | 693 | WP_000138552 | DotI/IcmL family type IV secretion protein | traM |
| RI193_RS00385 (pCL053-1_00073) | 63659..64006 | - | 348 | WP_001055900 | conjugal transfer protein | traL |
| RI193_RS00390 (pCL053-1_00074) | 64024..67788 | - | 3765 | WP_001141540 | LPD7 domain-containing protein | - |
| RI193_RS00395 (pCL053-1_00075) | 67878..68429 | - | 552 | WP_052987786 | phospholipase D family protein | - |
| RI193_RS00400 (pCL053-1_00076) | 68444..68734 | - | 291 | WP_001314267 | hypothetical protein | traK |
| RI193_RS00405 (pCL053-1_00077) | 68731..69879 | - | 1149 | WP_001024972 | plasmid transfer ATPase TraJ | virB11 |
| RI193_RS00410 (pCL053-1_00078) | 69876..70694 | - | 819 | WP_031942450 | IncI1-type conjugal transfer lipoprotein TraI | traI |
| RI193_RS00415 (pCL053-1_00079) | 70691..71149 | - | 459 | WP_001079808 | IncI1-type conjugal transfer lipoprotein TraH | - |
| RI193_RS00420 (pCL053-1_00080) | 71544..72128 | - | 585 | WP_000977522 | histidine phosphatase family protein | - |
| RI193_RS00425 (pCL053-1_00081) | 72188..73390 | - | 1203 | WP_000976351 | conjugal transfer protein TraF | - |
| RI193_RS00430 (pCL053-1_00082) | 73475..74299 | - | 825 | WP_001238939 | conjugal transfer protein TraE | traE |
| RI193_RS00435 (pCL053-1_00083) | 74450..75604 | - | 1155 | WP_001139957 | tyrosine-type recombinase/integrase | - |
| RI193_RS00440 | 76450..76605 | - | 156 | WP_001302705 | hypothetical protein | - |
| RI193_RS00445 | 76733..76990 | + | 258 | WP_001302706 | hypothetical protein | - |
| RI193_RS00450 | 77125..77373 | + | 249 | WP_001349157 | hypothetical protein | - |
| RI193_RS00455 (pCL053-1_00085) | 77370..78662 | - | 1293 | WP_001417545 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| RI193_RS00460 (pCL053-1_00086) | 78662..79318 | - | 657 | WP_001193553 | prepilin peptidase | - |
| RI193_RS00465 (pCL053-1_00087) | 79303..79863 | - | 561 | WP_000014116 | lytic transglycosylase domain-containing protein | virB1 |
| RI193_RS00470 (pCL053-1_00088) | 79873..80487 | - | 615 | WP_000959785 | type 4 pilus major pilin | - |
| RI193_RS00475 (pCL053-1_00089) | 80505..81602 | - | 1098 | WP_001208805 | type II secretion system F family protein | - |
| RI193_RS00480 (pCL053-1_00090) | 81615..83168 | - | 1554 | WP_000362202 | GspE/PulE family protein | virB11 |
| RI193_RS00485 (pCL053-1_00091) | 83179..83631 | - | 453 | WP_001247336 | type IV pilus biogenesis protein PilP | - |
| RI193_RS00490 (pCL053-1_00092) | 83618..84913 | - | 1296 | WP_021560540 | type 4b pilus protein PilO2 | - |
| RI193_RS00495 (pCL053-1_00093) | 84906..86588 | - | 1683 | WP_000748143 | PilN family type IVB pilus formation outer membrane protein | - |
| RI193_RS00500 (pCL053-1_00094) | 86602..87039 | - | 438 | WP_000539807 | type IV pilus biogenesis protein PilM | - |
| RI193_RS00505 (pCL053-1_00095) | 87039..88106 | - | 1068 | WP_031942452 | type IV pilus biogenesis lipoprotein PilL | - |