T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 37658..77340
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RI192_RS00235 (pCL059-1_00046) | 35374..37665 | - | 2292 | WP_011264051 | F-type conjugative transfer protein TrbC | - |
| RI192_RS00240 (pCL059-1_00047) | 37658..38728 | - | 1071 | WP_000151590 | IncI1-type conjugal transfer protein TrbB | trbB |
| RI192_RS00245 (pCL059-1_00048) | 38747..39955 | - | 1209 | WP_107372241 | IncI1-type conjugal transfer protein TrbA | trbA |
| RI192_RS00250 (pCL059-1_00049) | 40262..41041 | - | 780 | WP_275450201 | protein FinQ | - |
| RI192_RS00255 (pCL059-1_00050) | 41668..41820 | + | 153 | WP_001387489 | Hok/Gef family protein | - |
| RI192_RS00260 (pCL059-1_00051) | 41892..42143 | - | 252 | WP_001291964 | hypothetical protein | - |
| RI192_RS00265 | 42644..42739 | + | 96 | WP_000609148 | DinQ-like type I toxin DqlB | - |
| RI192_RS00270 (pCL059-1_00053) | 42804..42980 | - | 177 | WP_001054898 | hypothetical protein | - |
| RI192_RS00275 (pCL059-1_00054) | 43346..43555 | + | 210 | WP_000062603 | HEAT repeat domain-containing protein | - |
| RI192_RS00280 (pCL059-1_00055) | 43627..44301 | - | 675 | WP_223866377 | plasmid IncI1-type surface exclusion protein ExcA | - |
| RI192_RS00285 (pCL059-1_00056) | 44351..46519 | - | 2169 | WP_001774191 | DotA/TraY family protein | traY |
| RI192_RS00290 (pCL059-1_00057) | 46616..47200 | - | 585 | WP_001037987 | IncI1-type conjugal transfer protein TraX | - |
| RI192_RS00295 (pCL059-1_00058) | 47229..48431 | - | 1203 | WP_107372242 | IncI1-type conjugal transfer protein TraW | traW |
| RI192_RS00300 (pCL059-1_00059) | 48398..49012 | - | 615 | WP_000337395 | IncI1-type conjugal transfer protein TraV | traV |
| RI192_RS00305 (pCL059-1_00060) | 49012..52056 | - | 3045 | WP_107372243 | IncI1-type conjugal transfer protein TraU | traU |
| RI192_RS00310 (pCL059-1_00061) | 52146..52946 | - | 801 | WP_107372244 | IncI1-type conjugal transfer protein TraT | traT |
| RI192_RS00315 (pCL059-1_00062) | 52930..53118 | - | 189 | WP_001277253 | putative conjugal transfer protein TraS | - |
| RI192_RS00320 (pCL059-1_00063) | 53182..53586 | - | 405 | WP_000086965 | IncI1-type conjugal transfer protein TraR | traR |
| RI192_RS00325 (pCL059-1_00064) | 53637..54164 | - | 528 | WP_001055569 | conjugal transfer protein TraQ | traQ |
| RI192_RS00330 (pCL059-1_00065) | 54164..54868 | - | 705 | WP_000801920 | IncI1-type conjugal transfer protein TraP | traP |
| RI192_RS00335 (pCL059-1_00066) | 54868..56157 | - | 1290 | WP_001271994 | conjugal transfer protein TraO | traO |
| RI192_RS00340 (pCL059-1_00067) | 56160..57143 | - | 984 | WP_001191879 | IncI1-type conjugal transfer protein TraN | traN |
| RI192_RS00345 (pCL059-1_00068) | 57154..57846 | - | 693 | WP_000138552 | DotI/IcmL family type IV secretion protein | traM |
| RI192_RS00350 (pCL059-1_00069) | 57843..58190 | - | 348 | WP_001055900 | conjugal transfer protein | traL |
| RI192_RS00355 (pCL059-1_00070) | 58208..61972 | - | 3765 | WP_001141540 | LPD7 domain-containing protein | - |
| RI192_RS00360 (pCL059-1_00071) | 62062..62613 | - | 552 | WP_000014586 | phospholipase D family protein | - |
| RI192_RS00365 (pCL059-1_00072) | 62628..62918 | - | 291 | WP_001314267 | hypothetical protein | traK |
| RI192_RS00370 (pCL059-1_00073) | 62915..64063 | - | 1149 | WP_001024972 | plasmid transfer ATPase TraJ | virB11 |
| RI192_RS00375 (pCL059-1_00074) | 64060..64878 | - | 819 | WP_097763371 | IncI1-type conjugal transfer lipoprotein TraI | traI |
| RI192_RS00380 (pCL059-1_00075) | 64875..65333 | - | 459 | WP_001079808 | IncI1-type conjugal transfer lipoprotein TraH | - |
| RI192_RS00385 (pCL059-1_00076) | 65728..66312 | - | 585 | WP_000977522 | histidine phosphatase family protein | - |
| RI192_RS00390 (pCL059-1_00077) | 66372..67574 | - | 1203 | WP_000976353 | conjugal transfer protein TraF | - |
| RI192_RS00395 (pCL059-1_00078) | 67660..68484 | - | 825 | WP_001545755 | conjugal transfer protein TraE | traE |
| RI192_RS00400 (pCL059-1_00079) | 68635..69789 | - | 1155 | WP_001139958 | tyrosine-type recombinase/integrase | - |
| RI192_RS00405 | 69773..70072 | + | 300 | WP_223873359 | pilus assembly protein PilV | - |
| RI192_RS00410 | 70385..70642 | + | 258 | WP_001302706 | hypothetical protein | - |
| RI192_RS00415 | 71310..71558 | + | 249 | WP_001349157 | hypothetical protein | - |
| RI192_RS00420 (pCL059-1_00082) | 71555..72847 | - | 1293 | WP_001390622 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| RI192_RS00425 (pCL059-1_00083) | 72847..73503 | - | 657 | WP_001193549 | A24 family peptidase | - |
| RI192_RS00430 (pCL059-1_00084) | 73488..74048 | - | 561 | WP_000014005 | lytic transglycosylase domain-containing protein | virB1 |
| RI192_RS00435 (pCL059-1_00085) | 74058..74672 | - | 615 | WP_000908227 | type 4 pilus major pilin | - |
| RI192_RS00440 (pCL059-1_00086) | 74689..75774 | - | 1086 | WP_001208802 | type II secretion system F family protein | - |
| RI192_RS00445 (pCL059-1_00087) | 75787..77340 | - | 1554 | WP_001545756 | GspE/PulE family protein | virB11 |
| RI192_RS00450 (pCL059-1_00088) | 77351..77803 | - | 453 | WP_001247333 | type IV pilus biogenesis protein PilP | - |
| RI192_RS00455 (pCL059-1_00089) | 77790..79085 | - | 1296 | WP_016245572 | type 4b pilus protein PilO2 | - |
| RI192_RS00460 (pCL059-1_00090) | 79078..80760 | - | 1683 | WP_000748143 | PilN family type IVB pilus formation outer membrane protein | - |
| RI192_RS00465 (pCL059-1_00091) | 80774..81211 | - | 438 | WP_001545758 | type IV pilus biogenesis protein PilM | - |
| RI192_RS00470 (pCL059-1_00092) | 81211..82278 | - | 1068 | WP_001545759 | type IV pilus biogenesis lipoprotein PilL | - |