T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 43565..62764
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDO06_RS01175 (NIHE100087_pO0600) | 38649..38960 | + | 312 | WP_004187333 | hypothetical protein | - |
| LDO06_RS01180 (NIHE100087_pO0610) | 39093..39629 | + | 537 | WP_004187332 | hypothetical protein | - |
| LDO06_RS01185 (NIHE100087_pO0620) | 40131..40526 | - | 396 | WP_179213477 | MobC | - |
| LDO06_RS01190 (NIHE100087_pO0630) | 40561..41088 | + | 528 | WP_172740549 | plasmid mobilization protein MobA | - |
| LDO06_RS01195 (NIHE100087_pO0640) | 41075..43054 | + | 1980 | WP_004187323 | TraI/MobA(P) family conjugative relaxase | - |
| LDO06_RS01200 (NIHE100087_pO0650) | 43068..43568 | + | 501 | WP_004187320 | DotD/TraH family lipoprotein | - |
| LDO06_RS01205 (NIHE100087_pO0660) | 43565..44344 | + | 780 | WP_004187315 | type IV secretory system conjugative DNA transfer family protein | traI |
| LDO06_RS01210 (NIHE100087_pO0670) | 44355..45518 | + | 1164 | WP_004187313 | plasmid transfer ATPase TraJ | virB11 |
| LDO06_RS01215 (NIHE100087_pO0680) | 45508..45768 | + | 261 | WP_004187310 | IcmT/TraK family protein | traK |
| LDO06_RS01220 (NIHE100087_pO0690) | 45793..49140 | + | 3348 | WP_223963185 | LPD7 domain-containing protein | - |
| LDO06_RS01225 (NIHE100087_pO0700) | 49106..49618 | + | 513 | WP_011091071 | hypothetical protein | traL |
| LDO06_RS01230 (NIHE100087_pO0710) | 49619..49831 | - | 213 | WP_305953721 | Hha/YmoA family nucleoid-associated regulatory protein | - |
| LDO06_RS01235 (NIHE100087_pO0720) | 49803..50213 | - | 411 | WP_004187465 | H-NS family nucleoid-associated regulatory protein | - |
| LDO06_RS01240 (NIHE100087_pO0730) | 50281..50994 | + | 714 | WP_004187467 | DotI/IcmL family type IV secretion protein | traM |
| LDO06_RS01245 (NIHE100087_pO0740) | 51003..52154 | + | 1152 | WP_004187471 | DotH/IcmK family type IV secretion protein | traN |
| LDO06_RS01250 (NIHE100087_pO0750) | 52166..53515 | + | 1350 | WP_004187474 | conjugal transfer protein TraO | traO |
| LDO06_RS01255 (NIHE100087_pO0760) | 53527..54231 | + | 705 | WP_015060002 | conjugal transfer protein TraP | traP |
| LDO06_RS01260 (NIHE100087_pO0770) | 54255..54785 | + | 531 | WP_004187478 | conjugal transfer protein TraQ | traQ |
| LDO06_RS01265 (NIHE100087_pO0780) | 54802..55191 | + | 390 | WP_004187479 | DUF6750 family protein | traR |
| LDO06_RS01270 (NIHE100087_pO0790) | 55237..55731 | + | 495 | WP_004187480 | hypothetical protein | - |
| LDO06_RS01275 (NIHE100087_pO0800) | 55728..58778 | + | 3051 | WP_004187482 | hypothetical protein | traU |
| LDO06_RS01280 (NIHE100087_pO0810) | 58775..59983 | + | 1209 | WP_011091082 | conjugal transfer protein TraW | traW |
| LDO06_RS01285 (NIHE100087_pO0820) | 59980..60576 | + | 597 | WP_015060003 | hypothetical protein | - |
| LDO06_RS01290 (NIHE100087_pO0830) | 60569..62764 | + | 2196 | WP_015062834 | DotA/TraY family protein | traY |
| LDO06_RS01295 (NIHE100087_pO0840) | 62766..63419 | + | 654 | WP_015060005 | hypothetical protein | - |