T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 111087..132704
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDO06_RS00640 (NIHE100087_pN1260) | 111087..113276 | - | 2190 | WP_058655869 | type IV conjugative transfer system coupling protein TraD | virb4 |
| LDO06_RS00645 (NIHE100087_pN1270) | 113273..113503 | - | 231 | WP_058655870 | hypothetical protein | - |
| LDO06_RS00650 (NIHE100087_pN1280) | 113699..114310 | - | 612 | WP_058655871 | hypothetical protein | - |
| LDO06_RS00655 (NIHE100087_pN1290) | 114307..117195 | - | 2889 | WP_058655872 | conjugal transfer mating-pair stabilization protein TraG | traG |
| LDO06_RS00660 (NIHE100087_pN1300) | 117195..118562 | - | 1368 | WP_058655873 | conjugal transfer pilus assembly protein TraH | traH |
| LDO06_RS00665 (NIHE100087_pN1310) | 118555..118896 | - | 342 | WP_058655874 | hypothetical protein | - |
| LDO06_RS00670 (NIHE100087_pN1320) | 118953..119498 | - | 546 | WP_017694234 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | traF |
| LDO06_RS00675 (NIHE100087_pN1330) | 119498..119794 | - | 297 | WP_017694233 | hypothetical protein | - |
| LDO06_RS00680 (NIHE100087_pN1340) | 119808..120614 | - | 807 | WP_223174891 | type-F conjugative transfer system pilin assembly protein TraF | traF |
| LDO06_RS00685 (NIHE100087_pN1350) | 120611..122440 | - | 1830 | WP_058655876 | type-F conjugative transfer system mating-pair stabilization protein TraN | traN |
| LDO06_RS00690 (NIHE100087_pN1360) | 122437..123063 | - | 627 | WP_058655877 | type-F conjugative transfer system pilin assembly protein TrbC | trbC |
| LDO06_RS00695 (NIHE100087_pN1370) | 123082..124077 | - | 996 | WP_058655878 | conjugal transfer pilus assembly protein TraU | traU |
| LDO06_RS00700 (NIHE100087_pN1380) | 124074..124472 | - | 399 | WP_058655879 | hypothetical protein | - |
| LDO06_RS00705 (NIHE100087_pN1390) | 124472..125098 | - | 627 | WP_058655880 | type-F conjugative transfer system protein TraW | traW |
| LDO06_RS00710 (NIHE100087_pN1400) | 125098..125313 | - | 216 | WP_058655881 | TraR/DksA C4-type zinc finger protein | - |
| LDO06_RS00715 (NIHE100087_pN1410) | 125306..125788 | - | 483 | WP_072201922 | type-F conjugative transfer system protein TrbI | - |
| LDO06_RS00720 (NIHE100087_pN1420) | 125770..128385 | - | 2616 | WP_032713695 | type IV secretion system protein TraC | virb4 |
| LDO06_RS00725 | 128388..128975 | - | 588 | WP_058655882 | type IV conjugative transfer system lipoprotein TraV | traV |
| LDO06_RS00730 | 129051..129296 | - | 246 | WP_017694222 | hypothetical protein | virb4 |
| LDO06_RS00735 (NIHE100087_pN1440) | 129323..129703 | - | 381 | WP_058655883 | hypothetical protein | - |
| LDO06_RS00740 (NIHE100087_pN1450) | 129700..131058 | - | 1359 | WP_058655884 | TrbI/VirB10 family protein | traB |
| LDO06_RS00745 (NIHE100087_pN1460) | 131051..131827 | - | 777 | WP_058655885 | type-F conjugative transfer system secretin TraK | traK |
| LDO06_RS00750 (NIHE100087_pN1470) | 131811..132380 | - | 570 | WP_017694218 | type IV conjugative transfer system protein TraE | traE |
| LDO06_RS00755 (NIHE100087_pN1480) | 132399..132704 | - | 306 | WP_017694217 | type IV conjugative transfer system protein TraL | traL |
| LDO06_RS00760 (NIHE100087_pN1490) | 132803..133507 | - | 705 | WP_001067858 | IS6-like element IS26 family transposase | - |
| LDO06_RS00765 (NIHE100087_pN1500) | 133571..134827 | - | 1257 | Protein_151 | Tn3-like element Tn3 family transposase | - |
| LDO06_RS00770 (NIHE100087_pN1510) | 134991..135548 | + | 558 | WP_058672054 | recombinase family protein | - |
| LDO06_RS00775 (NIHE100087_pN1520) | 135731..136591 | + | 861 | WP_000027057 | broad-spectrum class A beta-lactamase TEM-1 | - |
| LDO06_RS00780 | 136739..136939 | + | 201 | Protein_154 | Tn3 family transposase | - |