T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 28240..38256
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RC088_RS23330 (RC088_23330) | 24655..25578 | + | 924 | WP_000902514 | SMEK domain-containing protein | - |
| RC088_RS23335 (RC088_23335) | 25693..25995 | - | 303 | WP_072205570 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| RC088_RS23340 (RC088_23340) | 25992..26405 | - | 414 | WP_000722603 | cag pathogenicity island Cag12 family protein | - |
| RC088_RS23345 (RC088_23345) | 26402..28237 | - | 1836 | WP_000053818 | type IV secretory system conjugative DNA transfer family protein | - |
| RC088_RS23350 (RC088_23350) | 28240..29271 | - | 1032 | WP_001058465 | P-type DNA transfer ATPase VirB11 | virB11 |
| RC088_RS23355 (RC088_23355) | 29273..30478 | - | 1206 | WP_000139139 | VirB10/TraB/TrbI family type IV secretion system protein | virB10 |
| RC088_RS23360 (RC088_23360) | 30475..31404 | - | 930 | WP_000783379 | TrbG/VirB9 family P-type conjugative transfer protein | virB9 |
| RC088_RS23365 (RC088_23365) | 31409..32122 | - | 714 | WP_000394613 | type IV secretion system protein | virB8 |
| RC088_RS23370 (RC088_23370) | 32367..33497 | - | 1131 | WP_000524912 | type IV secretion system protein | virB6 |
| RC088_RS23375 (RC088_23375) | 33506..33793 | - | 288 | WP_000835347 | EexN family lipoprotein | - |
| RC088_RS23380 (RC088_23380) | 33794..34552 | - | 759 | WP_000744200 | type IV secretion system protein | - |
| RC088_RS23385 (RC088_23385) | 34563..37316 | - | 2754 | WP_016731577 | VirB3 family type IV secretion system protein | virb4 |
| RC088_RS23390 (RC088_23390) | 37335..37631 | - | 297 | WP_000916182 | TrbC/VirB2 family protein | virB2 |
| RC088_RS23395 (RC088_23395) | 37609..38256 | - | 648 | WP_053266207 | lytic transglycosylase domain-containing protein | virB1 |
| RC088_RS23400 (RC088_23400) | 38289..38501 | - | 213 | WP_000125172 | hypothetical protein | - |
| RC088_RS23405 (RC088_23405) | 38431..38949 | - | 519 | WP_001446885 | transcription termination/antitermination NusG family protein | - |
| RC088_RS23410 (RC088_23410) | 39302..40468 | - | 1167 | WP_000539529 | MobP1 family relaxase | - |
| RC088_RS23415 (RC088_23415) | 40471..41016 | - | 546 | WP_001436753 | DNA distortion polypeptide 1 | - |
| RC088_RS23420 (RC088_23420) | 41342..41614 | - | 273 | WP_000160399 | hypothetical protein | - |
| RC088_RS23425 (RC088_23425) | 41627..41776 | - | 150 | WP_000003880 | hypothetical protein | - |
| RC088_RS23430 (RC088_23430) | 41846..42025 | - | 180 | WP_000439078 | hypothetical protein | - |
| RC088_RS23435 (RC088_23435) | 42068..42397 | - | 330 | WP_000866649 | hypothetical protein | - |
| RC088_RS23440 (RC088_23440) | 42490..42705 | - | 216 | WP_001180118 | hypothetical protein | - |
| RC088_RS23445 (RC088_23445) | 42695..42940 | - | 246 | WP_000356542 | hypothetical protein | - |