T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 39344..66087
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIY89_RS23860 (NIY89_23830) | 35309..35743 | + | 435 | WP_000845873 | conjugation system SOS inhibitor PsiB | - |
| NIY89_RS23865 (NIY89_23835) | 35740..36502 | + | 763 | Protein_45 | plasmid SOS inhibition protein A | - |
| NIY89_RS23870 (NIY89_23840) | 36471..36659 | - | 189 | WP_001299721 | hypothetical protein | - |
| NIY89_RS23875 (NIY89_23845) | 36681..36830 | + | 150 | Protein_47 | plasmid maintenance protein Mok | - |
| NIY89_RS23880 (NIY89_23850) | 36772..36897 | + | 126 | WP_001372321 | type I toxin-antitoxin system Hok family toxin | - |
| NIY89_RS23885 (NIY89_23855) | 37117..37347 | + | 231 | WP_256876178 | hypothetical protein | - |
| NIY89_RS23890 (NIY89_23860) | 37345..37518 | - | 174 | Protein_50 | hypothetical protein | - |
| NIY89_RS23895 (NIY89_23865) | 37588..37794 | + | 207 | WP_000547971 | hypothetical protein | - |
| NIY89_RS23900 (NIY89_23870) | 37819..38106 | + | 288 | WP_000107535 | hypothetical protein | - |
| NIY89_RS23905 (NIY89_23875) | 38226..39047 | + | 822 | WP_001234469 | DUF932 domain-containing protein | - |
| NIY89_RS23910 (NIY89_23880) | 39344..39991 | - | 648 | WP_256876177 | transglycosylase SLT domain-containing protein | virB1 |
| NIY89_RS23915 (NIY89_23885) | 40268..40651 | + | 384 | WP_000124979 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| NIY89_RS23920 (NIY89_23890) | 40842..41528 | + | 687 | WP_000332493 | PAS domain-containing protein | - |
| NIY89_RS23925 (NIY89_23895) | 41622..41849 | + | 228 | WP_001254385 | conjugal transfer relaxosome protein TraY | - |
| NIY89_RS23930 (NIY89_23900) | 41883..42242 | + | 360 | WP_000340272 | type IV conjugative transfer system pilin TraA | - |
| NIY89_RS23935 (NIY89_23905) | 42257..42568 | + | 312 | WP_000012106 | type IV conjugative transfer system protein TraL | traL |
| NIY89_RS23940 (NIY89_23910) | 42590..43156 | + | 567 | WP_000399792 | type IV conjugative transfer system protein TraE | traE |
| NIY89_RS23945 (NIY89_23915) | 43143..43871 | + | 729 | WP_001230787 | type-F conjugative transfer system secretin TraK | traK |
| NIY89_RS23950 (NIY89_23920) | 43871..45298 | + | 1428 | WP_000146685 | F-type conjugal transfer pilus assembly protein TraB | traB |
| NIY89_RS23955 (NIY89_23925) | 45288..45860 | + | 573 | WP_000002794 | conjugal transfer pilus-stabilizing protein TraP | - |
| NIY89_RS23960 (NIY89_23930) | 45857..46174 | + | 318 | WP_001057292 | conjugal transfer protein TrbD | virb4 |
| NIY89_RS23965 (NIY89_23935) | 46171..46422 | + | 252 | WP_001038341 | conjugal transfer protein TrbG | - |
| NIY89_RS23970 (NIY89_23940) | 46419..46934 | + | 516 | WP_000809906 | type IV conjugative transfer system lipoprotein TraV | traV |
| NIY89_RS23975 (NIY89_23945) | 47068..47289 | + | 222 | WP_001278689 | conjugal transfer protein TraR | - |
| NIY89_RS23980 (NIY89_23950) | 47449..50076 | + | 2628 | WP_001064248 | type IV secretion system protein TraC | virb4 |
| NIY89_RS23985 (NIY89_23955) | 50073..50459 | + | 387 | WP_000214096 | type-F conjugative transfer system protein TrbI | - |
| NIY89_RS23990 (NIY89_23960) | 50456..51088 | + | 633 | WP_001203745 | type-F conjugative transfer system protein TraW | traW |
| NIY89_RS23995 (NIY89_23965) | 51085..52077 | + | 993 | WP_000830839 | conjugal transfer pilus assembly protein TraU | traU |
| NIY89_RS24000 (NIY89_23970) | 52103..52564 | + | 462 | WP_000277845 | hypothetical protein | - |
| NIY89_RS24005 (NIY89_23975) | 52594..53046 | + | 453 | WP_000069427 | hypothetical protein | - |
| NIY89_RS24010 (NIY89_23980) | 53074..53712 | + | 639 | WP_001104248 | type-F conjugative transfer system pilin assembly protein TrbC | trbC |
| NIY89_RS24015 (NIY89_23985) | 53709..55517 | + | 1809 | WP_000821818 | type-F conjugative transfer system mating-pair stabilization protein TraN | traN |
| NIY89_RS24020 (NIY89_23990) | 55544..55801 | + | 258 | WP_000864325 | conjugal transfer protein TrbE | - |
| NIY89_RS24025 (NIY89_23995) | 55794..56537 | + | 744 | WP_001030376 | type-F conjugative transfer system pilin assembly protein TraF | traF |
| NIY89_RS24030 (NIY89_24000) | 56553..56900 | + | 348 | WP_001287895 | conjugal transfer protein TrbA | - |
| NIY89_RS24035 (NIY89_24005) | 57019..57303 | + | 285 | WP_000624109 | type-F conjugative transfer system pilin chaperone TraQ | - |
| NIY89_RS24040 (NIY89_24010) | 57290..57835 | + | 546 | WP_000059847 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | traF |
| NIY89_RS24045 (NIY89_24015) | 57765..58127 | + | 363 | WP_001443292 | P-type conjugative transfer protein TrbJ | - |
| NIY89_RS24050 (NIY89_24020) | 58127..59500 | + | 1374 | Protein_82 | conjugal transfer pilus assembly protein TraH | - |
| NIY89_RS24055 (NIY89_24025) | 59497..62319 | + | 2823 | WP_011251382 | conjugal transfer mating-pair stabilization protein TraG | traG |
| NIY89_RS24060 (NIY89_24030) | 62334..62837 | + | 504 | WP_000605510 | hypothetical protein | - |
| NIY89_RS24065 (NIY89_24035) | 62869..63600 | + | 732 | WP_000850424 | conjugal transfer complement resistance protein TraT | - |
| NIY89_RS24070 (NIY89_24040) | 63853..66087 | + | 2235 | WP_256877816 | type IV conjugative transfer system coupling protein TraD | virb4 |