T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 30589..57332
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIY87_RS23740 (NIY87_23720) | 30589..32823 | - | 2235 | WP_256877816 | type IV conjugative transfer system coupling protein TraD | virb4 |
| NIY87_RS23745 (NIY87_23725) | 33076..33807 | - | 732 | WP_000850424 | conjugal transfer complement resistance protein TraT | - |
| NIY87_RS23750 (NIY87_23730) | 33839..34342 | - | 504 | WP_000605510 | hypothetical protein | - |
| NIY87_RS23755 (NIY87_23735) | 34357..37179 | - | 2823 | WP_011251382 | conjugal transfer mating-pair stabilization protein TraG | traG |
| NIY87_RS23760 (NIY87_23740) | 37176..38549 | - | 1374 | Protein_28 | conjugal transfer pilus assembly protein TraH | - |
| NIY87_RS23765 (NIY87_23745) | 38549..38911 | - | 363 | WP_001443292 | P-type conjugative transfer protein TrbJ | - |
| NIY87_RS23770 (NIY87_23750) | 38841..39386 | - | 546 | WP_000059847 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | traF |
| NIY87_RS23775 (NIY87_23755) | 39373..39657 | - | 285 | WP_000624109 | type-F conjugative transfer system pilin chaperone TraQ | - |
| NIY87_RS23780 (NIY87_23760) | 39776..40123 | - | 348 | WP_001287895 | conjugal transfer protein TrbA | - |
| NIY87_RS23785 (NIY87_23765) | 40139..40882 | - | 744 | WP_001030376 | type-F conjugative transfer system pilin assembly protein TraF | traF |
| NIY87_RS23790 (NIY87_23770) | 40875..41132 | - | 258 | WP_000864325 | conjugal transfer protein TrbE | - |
| NIY87_RS23795 (NIY87_23775) | 41159..42967 | - | 1809 | WP_000821818 | type-F conjugative transfer system mating-pair stabilization protein TraN | traN |
| NIY87_RS23800 (NIY87_23780) | 42964..43602 | - | 639 | WP_001104248 | type-F conjugative transfer system pilin assembly protein TrbC | trbC |
| NIY87_RS23805 (NIY87_23785) | 43630..44082 | - | 453 | WP_000069427 | hypothetical protein | - |
| NIY87_RS23810 (NIY87_23790) | 44112..44573 | - | 462 | WP_000277845 | hypothetical protein | - |
| NIY87_RS23815 (NIY87_23795) | 44599..45591 | - | 993 | WP_000830839 | conjugal transfer pilus assembly protein TraU | traU |
| NIY87_RS23820 (NIY87_23800) | 45588..46220 | - | 633 | WP_001203745 | type-F conjugative transfer system protein TraW | traW |
| NIY87_RS23825 (NIY87_23805) | 46217..46603 | - | 387 | WP_000214096 | type-F conjugative transfer system protein TrbI | - |
| NIY87_RS23830 (NIY87_23810) | 46600..49227 | - | 2628 | WP_001064248 | type IV secretion system protein TraC | virb4 |
| NIY87_RS23835 (NIY87_23815) | 49387..49608 | - | 222 | WP_001278689 | conjugal transfer protein TraR | - |
| NIY87_RS23840 (NIY87_23820) | 49742..50257 | - | 516 | WP_000809906 | type IV conjugative transfer system lipoprotein TraV | traV |
| NIY87_RS23845 (NIY87_23825) | 50254..50505 | - | 252 | WP_001038341 | conjugal transfer protein TrbG | - |
| NIY87_RS23850 (NIY87_23830) | 50502..50819 | - | 318 | WP_001057292 | conjugal transfer protein TrbD | virb4 |
| NIY87_RS23855 (NIY87_23835) | 50816..51388 | - | 573 | WP_000002794 | conjugal transfer pilus-stabilizing protein TraP | - |
| NIY87_RS23860 (NIY87_23840) | 51378..52805 | - | 1428 | WP_000146685 | F-type conjugal transfer pilus assembly protein TraB | traB |
| NIY87_RS23865 (NIY87_23845) | 52805..53533 | - | 729 | WP_001230787 | type-F conjugative transfer system secretin TraK | traK |
| NIY87_RS23870 (NIY87_23850) | 53520..54086 | - | 567 | WP_000399792 | type IV conjugative transfer system protein TraE | traE |
| NIY87_RS23875 (NIY87_23855) | 54108..54419 | - | 312 | WP_000012106 | type IV conjugative transfer system protein TraL | traL |
| NIY87_RS23880 (NIY87_23860) | 54434..54793 | - | 360 | WP_000340272 | type IV conjugative transfer system pilin TraA | - |
| NIY87_RS23885 (NIY87_23865) | 54827..55054 | - | 228 | WP_001254385 | conjugal transfer relaxosome protein TraY | - |
| NIY87_RS23890 (NIY87_23870) | 55148..55834 | - | 687 | WP_000332493 | PAS domain-containing protein | - |
| NIY87_RS23895 (NIY87_23875) | 56025..56408 | - | 384 | WP_000124979 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| NIY87_RS23900 (NIY87_23880) | 56685..57332 | + | 648 | WP_256876177 | transglycosylase SLT domain-containing protein | virB1 |
| NIY87_RS23905 (NIY87_23885) | 57629..58450 | - | 822 | WP_001234469 | DUF932 domain-containing protein | - |
| NIY87_RS23910 (NIY87_23890) | 58570..58857 | - | 288 | WP_000107535 | hypothetical protein | - |
| NIY87_RS23915 (NIY87_23895) | 58882..59088 | - | 207 | WP_000547971 | hypothetical protein | - |
| NIY87_RS23920 (NIY87_23900) | 59158..59331 | + | 174 | Protein_60 | hypothetical protein | - |
| NIY87_RS23925 (NIY87_23905) | 59329..59559 | - | 231 | WP_256876178 | hypothetical protein | - |
| NIY87_RS23930 (NIY87_23910) | 59779..59904 | - | 126 | WP_001372321 | type I toxin-antitoxin system Hok family toxin | - |
| NIY87_RS23935 (NIY87_23915) | 59846..59995 | - | 150 | Protein_63 | plasmid maintenance protein Mok | - |
| NIY87_RS23940 (NIY87_23920) | 60017..60205 | + | 189 | WP_001299721 | hypothetical protein | - |
| NIY87_RS23945 (NIY87_23925) | 60174..60936 | - | 763 | Protein_65 | plasmid SOS inhibition protein A | - |
| NIY87_RS23950 (NIY87_23930) | 60933..61367 | - | 435 | WP_000845873 | conjugation system SOS inhibitor PsiB | - |