T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 80765..88518
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| shn_RS33205 (shn_33205) | 76137..77351 | - | 1215 | WP_064334702 | plasmid replication protein RepC | - |
| shn_RS33210 (shn_33210) | 77507..78529 | - | 1023 | WP_064334703 | plasmid partitioning protein RepB | - |
| shn_RS33215 (shn_33215) | 78526..79740 | - | 1215 | WP_064334742 | plasmid partitioning protein RepA | - |
| shn_RS33220 (shn_33220) | 80129..80752 | + | 624 | WP_064334704 | acyl-homoserine-lactone synthase | - |
| shn_RS33225 (shn_33225) | 80765..81742 | + | 978 | WP_064334705 | P-type conjugative transfer ATPase TrbB | virB11 |
| shn_RS33230 (shn_33230) | 81732..82115 | + | 384 | WP_064334706 | TrbC/VirB2 family protein | virB2 |
| shn_RS33235 (shn_33235) | 82108..82407 | + | 300 | WP_064334707 | conjugal transfer protein TrbD | virB3 |
| shn_RS33240 (shn_33240) | 82417..84873 | + | 2457 | WP_064334708 | conjugal transfer protein TrbE | virb4 |
| shn_RS33245 (shn_33245) | 84845..85648 | + | 804 | WP_064334709 | P-type conjugative transfer protein TrbJ | virB5 |
| shn_RS33250 (shn_33250) | 85642..85818 | + | 177 | WP_064334710 | entry exclusion protein TrbK | - |
| shn_RS33255 (shn_33255) | 85823..87001 | + | 1179 | WP_064334711 | P-type conjugative transfer protein TrbL | virB6 |
| shn_RS33260 (shn_33260) | 87026..87688 | + | 663 | WP_064334712 | conjugal transfer protein TrbF | virB8 |
| shn_RS33265 (shn_33265) | 87706..88518 | + | 813 | WP_064334713 | P-type conjugative transfer protein TrbG | virB9 |
| shn_RS33270 (shn_33270) | 88522..88959 | + | 438 | WP_064334714 | conjugal transfer protein TrbH | - |
| shn_RS35565 | 89026..89706 | + | 681 | Protein_89 | conjugal transfer protein TrbI | - |
| shn_RS33280 (shn_33280) | 89890..90648 | - | 759 | WP_064328977 | IS21-like element helper ATPase IstB | - |
| shn_RS33285 (shn_33285) | 90645..92099 | - | 1455 | WP_084437716 | IS21 family transposase | - |
| shn_RS35570 | 92568..92771 | + | 204 | Protein_92 | transposase | - |
| shn_RS33290 (shn_33290) | 92761..93408 | - | 648 | WP_245337556 | helix-turn-helix domain-containing protein | - |