T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 43429..52519
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RA138_RS00310 | 39460..39693 | - | 234 | WP_001191890 | hypothetical protein | - |
| RA138_RS00315 | 39675..40292 | - | 618 | WP_001249395 | hypothetical protein | - |
| RA138_RS00320 | 40460..43432 | + | 2973 | WP_001326173 | MobH family relaxase | - |
| RA138_RS00325 | 43429..45294 | + | 1866 | WP_000178857 | conjugative transfer system coupling protein TraD | virb4 |
| RA138_RS00330 | 45305..45889 | + | 585 | WP_000332868 | hypothetical protein | - |
| RA138_RS00335 | 45846..46475 | + | 630 | WP_000743449 | DUF4400 domain-containing protein | tfc7 |
| RA138_RS00340 | 46485..46931 | + | 447 | WP_000122507 | hypothetical protein | - |
| RA138_RS00345 | 46941..47318 | + | 378 | WP_000869297 | hypothetical protein | - |
| RA138_RS00350 | 47318..47980 | + | 663 | WP_001231464 | hypothetical protein | - |
| RA138_RS00355 | 48161..48304 | + | 144 | WP_001275801 | hypothetical protein | - |
| RA138_RS00360 | 48316..48681 | + | 366 | WP_001052530 | hypothetical protein | - |
| RA138_RS00365 | 48826..49107 | + | 282 | WP_000805625 | type IV conjugative transfer system protein TraL | traL |
| RA138_RS00370 | 49104..49730 | + | 627 | WP_001049717 | TraE/TraK family type IV conjugative transfer system protein | traE |
| RA138_RS00375 | 49714..50631 | + | 918 | WP_000794249 | type-F conjugative transfer system secretin TraK | traK |
| RA138_RS00380 | 50631..51944 | + | 1314 | WP_024131605 | TraB/VirB10 family protein | traB |
| RA138_RS00385 | 51941..52519 | + | 579 | WP_000793435 | type IV conjugative transfer system lipoprotein TraV | traV |
| RA138_RS00390 | 52523..52915 | + | 393 | WP_000479535 | TraA family conjugative transfer protein | - |
| RA138_RS00395 | 53200..54462 | + | 1263 | WP_000608644 | IS1380-like element ISEcp1 family transposase | - |
| RA138_RS00400 | 54786..55931 | + | 1146 | WP_015056382 | class C beta-lactamase CMY-4 | - |
| RA138_RS00405 | 56025..56558 | + | 534 | WP_001221666 | lipocalin family protein | - |
| RA138_RS00410 | 56555..56872 | - | 318 | WP_000118520 | quaternary ammonium compound efflux SMR transporter SugE | - |