T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 26344..35920
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R3F78_RS01525 (R3F78_01525) | 21567..22139 | + | 573 | WP_259266211 | conjugative transfer signal peptidase TraF | - |
| R3F78_RS01530 (R3F78_01530) | 22197..22519 | + | 323 | Protein_26 | nitrilase-related carbon-nitrogen hydrolase | - |
| R3F78_RS01535 (R3F78_01535) | 22534..23139 | + | 606 | WP_035680223 | TraH family protein | - |
| R3F78_RS01540 (R3F78_01540) | 23170..23289 | - | 120 | Protein_28 | type II toxin-antitoxin system VapC family toxin | - |
| R3F78_RS01545 (R3F78_01545) | 23428..24018 | + | 591 | WP_049807966 | DUF2167 domain-containing protein | - |
| R3F78_RS01550 (R3F78_01550) | 24280..25149 | + | 870 | WP_232674645 | transcriptional repressor TraM | - |
| R3F78_RS01555 (R3F78_01555) | 25158..26069 | - | 912 | WP_232674644 | autoinducer binding domain-containing protein | - |
| R3F78_RS01560 (R3F78_01560) | 26344..27642 | - | 1299 | WP_028152603 | IncP-type conjugal transfer protein TrbI | virB10 |
| R3F78_RS01565 (R3F78_01565) | 27653..28117 | - | 465 | WP_028152602 | conjugal transfer protein TrbH | - |
| R3F78_RS01570 (R3F78_01570) | 28122..28946 | - | 825 | WP_028152601 | P-type conjugative transfer protein TrbG | virB9 |
| R3F78_RS01575 (R3F78_01575) | 28964..29626 | - | 663 | WP_028152600 | conjugal transfer protein TrbF | virB8 |
| R3F78_RS01580 (R3F78_01580) | 29641..30828 | - | 1188 | WP_038945592 | P-type conjugative transfer protein TrbL | virB6 |
| R3F78_RS01585 (R3F78_01585) | 30822..31034 | - | 213 | WP_028152598 | entry exclusion protein TrbK | - |
| R3F78_RS01590 (R3F78_01590) | 31028..31846 | - | 819 | WP_038953896 | P-type conjugative transfer protein TrbJ | virB5 |
| R3F78_RS01595 (R3F78_01595) | 31818..34271 | - | 2454 | WP_028152596 | conjugal transfer protein TrbE | virb4 |
| R3F78_RS01600 (R3F78_01600) | 34281..34580 | - | 300 | WP_028152595 | conjugal transfer protein TrbD | virB3 |
| R3F78_RS01605 (R3F78_01605) | 34573..34962 | - | 390 | WP_028152594 | TrbC/VirB2 family protein | virB2 |
| R3F78_RS01610 (R3F78_01610) | 34952..35920 | - | 969 | WP_060913174 | P-type conjugative transfer ATPase TrbB | virB11 |
| R3F78_RS01615 (R3F78_01615) | 35917..36546 | - | 630 | WP_063629878 | acyl-homoserine-lactone synthase | - |
| R3F78_RS01620 (R3F78_01620) | 37039..38232 | + | 1194 | WP_028152592 | plasmid partitioning protein RepA | - |
| R3F78_RS01625 (R3F78_01625) | 38229..39242 | + | 1014 | WP_049808001 | plasmid partitioning protein RepB | - |
| R3F78_RS01630 (R3F78_01630) | 39469..40693 | + | 1225 | Protein_46 | plasmid replication protein RepC | - |