T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 45613..58613
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NHF42_RS27470 (NHF42_27455) | 41644..41877 | - | 234 | WP_001191890 | hypothetical protein | - |
| NHF42_RS27475 (NHF42_27460) | 41859..42476 | - | 618 | WP_001249395 | hypothetical protein | - |
| NHF42_RS27480 (NHF42_27465) | 42644..45616 | + | 2973 | WP_001326173 | MobH family relaxase | - |
| NHF42_RS27485 (NHF42_27470) | 45613..47478 | + | 1866 | WP_000178857 | conjugative transfer system coupling protein TraD | virb4 |
| NHF42_RS27490 (NHF42_27475) | 47528..48073 | + | 546 | WP_000228720 | hypothetical protein | - |
| NHF42_RS27495 (NHF42_27480) | 48030..48659 | + | 630 | WP_000743449 | DUF4400 domain-containing protein | tfc7 |
| NHF42_RS27500 (NHF42_27485) | 48669..48992 | + | 324 | WP_227653269 | hypothetical protein | - |
| NHF42_RS27505 (NHF42_27490) | 49223..50020 | - | 798 | WP_015060052 | OXA-48 family carbapenem-hydrolyzing class D beta-lactamase OXA-181 | - |
| NHF42_RS27510 (NHF42_27495) | 50356..50691 | - | 336 | Protein_73 | transposase | - |
| NHF42_RS27515 (NHF42_27500) | 50750..51718 | - | 969 | WP_004099053 | IS5-like element IS903B family transposase | - |
| NHF42_RS27520 (NHF42_27505) | 51752..52684 | - | 933 | Protein_75 | IS1380-like element ISEcp1 family transposase | - |
| NHF42_RS27525 (NHF42_27510) | 53035..53412 | + | 378 | WP_000869297 | hypothetical protein | - |
| NHF42_RS27530 (NHF42_27515) | 53412..54074 | + | 663 | WP_001231464 | hypothetical protein | - |
| NHF42_RS27535 (NHF42_27520) | 54255..54398 | + | 144 | WP_001275801 | hypothetical protein | - |
| NHF42_RS27540 (NHF42_27525) | 54410..54775 | + | 366 | WP_001052530 | hypothetical protein | - |
| NHF42_RS27545 (NHF42_27530) | 54920..55201 | + | 282 | WP_000805625 | type IV conjugative transfer system protein TraL | traL |
| NHF42_RS27550 (NHF42_27535) | 55198..55824 | + | 627 | WP_001049717 | TraE/TraK family type IV conjugative transfer system protein | traE |
| NHF42_RS27555 (NHF42_27540) | 55808..56725 | + | 918 | WP_000794249 | type-F conjugative transfer system secretin TraK | traK |
| NHF42_RS27560 (NHF42_27545) | 56725..58038 | + | 1314 | WP_024131605 | TraB/VirB10 family protein | traB |
| NHF42_RS27565 (NHF42_27550) | 58035..58613 | + | 579 | WP_000793435 | type IV conjugative transfer system lipoprotein TraV | traV |
| NHF42_RS27570 (NHF42_27555) | 58617..59009 | + | 393 | WP_000479535 | TraA family conjugative transfer protein | - |
| NHF42_RS27575 (NHF42_27560) | 59294..60466 | + | 1173 | Protein_86 | IS1380-like element ISEcp1 family transposase | - |
| NHF42_RS27580 (NHF42_27565) | 60572..61759 | + | 1188 | WP_080399009 | IS4 family transposase | - |
| NHF42_RS27585 (NHF42_27570) | 62214..63359 | + | 1146 | WP_015056382 | class C beta-lactamase CMY-4 | - |