T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 45613..54703
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIT01_RS00340 | 41644..41877 | - | 234 | WP_001191890 | hypothetical protein | - |
| NIT01_RS00345 | 41859..42476 | - | 618 | WP_001249395 | hypothetical protein | - |
| NIT01_RS00350 | 42644..45616 | + | 2973 | WP_001326173 | MobH family relaxase | - |
| NIT01_RS00355 | 45613..47478 | + | 1866 | WP_000178857 | conjugative transfer system coupling protein TraD | virb4 |
| NIT01_RS00360 | 47489..48073 | + | 585 | WP_000332868 | hypothetical protein | - |
| NIT01_RS00365 | 48030..48659 | + | 630 | WP_000743449 | DUF4400 domain-containing protein | tfc7 |
| NIT01_RS00370 | 48669..49115 | + | 447 | WP_000122507 | hypothetical protein | - |
| NIT01_RS00375 | 49125..49502 | + | 378 | WP_000869297 | hypothetical protein | - |
| NIT01_RS00380 | 49502..50164 | + | 663 | WP_001231464 | hypothetical protein | - |
| NIT01_RS00385 | 50345..50488 | + | 144 | WP_001275801 | hypothetical protein | - |
| NIT01_RS00390 | 50500..50865 | + | 366 | WP_001052530 | hypothetical protein | - |
| NIT01_RS00395 | 51010..51291 | + | 282 | WP_000805625 | type IV conjugative transfer system protein TraL | traL |
| NIT01_RS00400 | 51288..51914 | + | 627 | WP_001049717 | TraE/TraK family type IV conjugative transfer system protein | traE |
| NIT01_RS00405 | 51898..52815 | + | 918 | WP_000794249 | type-F conjugative transfer system secretin TraK | traK |
| NIT01_RS00410 | 52815..54128 | + | 1314 | WP_024131605 | TraB/VirB10 family protein | traB |
| NIT01_RS00415 | 54125..54703 | + | 579 | WP_000793435 | type IV conjugative transfer system lipoprotein TraV | traV |
| NIT01_RS00420 | 54707..55099 | + | 393 | WP_000479535 | TraA family conjugative transfer protein | - |
| NIT01_RS00425 | 55384..56645 | + | 1262 | Protein_84 | IS1380-like element ISEcp1 family transposase | - |
| NIT01_RS00430 | 56969..58114 | + | 1146 | WP_015058212 | class C beta-lactamase CMY-6 | - |
| NIT01_RS00435 | 58208..58741 | + | 534 | WP_001221666 | lipocalin family protein | - |
| NIT01_RS00440 | 58738..59055 | - | 318 | WP_000118520 | quaternary ammonium compound efflux SMR transporter SugE | - |