T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 29939..46709
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| shn_RS33605 (shn_33605) | 28253..28771 | + | 519 | WP_245337565 | conjugative transfer signal peptidase TraF | - |
| shn_RS33610 (shn_33610) | 28761..29924 | + | 1164 | WP_064334770 | conjugal transfer protein TraB | - |
| shn_RS33615 (shn_33615) | 29939..30577 | + | 639 | WP_064334771 | TraH family protein | virB1 |
| shn_RS33620 (shn_33620) | 30666..31769 | - | 1104 | WP_245337566 | SEC-C domain-containing protein | - |
| shn_RS33625 (shn_33625) | 32020..32796 | + | 777 | WP_242224988 | hypothetical protein | - |
| shn_RS33630 (shn_33630) | 33288..34211 | + | 924 | WP_168168934 | IS110 family transposase | - |
| shn_RS33635 (shn_33635) | 34296..34730 | + | 435 | WP_064334772 | hypothetical protein | - |
| shn_RS33640 (shn_33640) | 34922..35320 | - | 399 | WP_064334773 | type II toxin-antitoxin system VapC family toxin | - |
| shn_RS33645 (shn_33645) | 35317..35673 | - | 357 | WP_242224990 | type II toxin-antitoxin system VapB family antitoxin | - |
| shn_RS33650 (shn_33650) | 35966..36280 | + | 315 | WP_145926151 | transcriptional repressor TraM | - |
| shn_RS33655 (shn_33655) | 36284..36985 | - | 702 | WP_084438747 | autoinducer binding domain-containing protein | - |
| shn_RS33660 (shn_33660) | 37189..38493 | - | 1305 | WP_064334775 | IncP-type conjugal transfer protein TrbI | virB10 |
| shn_RS33665 (shn_33665) | 38504..38941 | - | 438 | WP_064334776 | conjugal transfer protein TrbH | - |
| shn_RS33670 (shn_33670) | 38944..39756 | - | 813 | WP_064334777 | P-type conjugative transfer protein TrbG | virB9 |
| shn_RS33675 (shn_33675) | 39773..40435 | - | 663 | WP_064334778 | conjugal transfer protein TrbF | virB8 |
| shn_RS33680 (shn_33680) | 40453..41634 | - | 1182 | WP_064334779 | P-type conjugative transfer protein TrbL | virB6 |
| shn_RS33685 (shn_33685) | 41628..41834 | - | 207 | WP_064334780 | entry exclusion protein TrbK | - |
| shn_RS33690 (shn_33690) | 41831..42634 | - | 804 | WP_064334781 | P-type conjugative transfer protein TrbJ | virB5 |
| shn_RS33695 (shn_33695) | 42606..45059 | - | 2454 | WP_064334782 | conjugal transfer protein TrbE | virb4 |
| shn_RS33700 (shn_33700) | 45070..45369 | - | 300 | WP_064334783 | conjugal transfer protein TrbD | virB3 |
| shn_RS33705 (shn_33705) | 45362..45694 | - | 333 | WP_242225020 | TrbC/VirB2 family protein | virB2 |
| shn_RS33710 (shn_33710) | 45738..46709 | - | 972 | WP_064334785 | P-type conjugative transfer ATPase TrbB | virB11 |
| shn_RS33715 (shn_33715) | 46713..47339 | - | 627 | WP_064334786 | acyl-homoserine-lactone synthase TraI | - |
| shn_RS33720 (shn_33720) | 47734..48915 | + | 1182 | WP_256388555 | plasmid partitioning protein RepA | - |
| shn_RS33725 (shn_33725) | 48994..49980 | + | 987 | WP_064334788 | plasmid partitioning protein RepB | - |
| shn_RS33730 (shn_33730) | 50152..51369 | + | 1218 | WP_064334789 | plasmid replication protein RepC | - |