T4SS
T4SS
T4SS were predicted by using oriTfinder2.
Location: 72941..85798
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| shn_RS30450 (shn_30450) | 68224..69462 | - | 1239 | WP_064334275 | plasmid replication protein RepC | - |
| shn_RS30455 (shn_30455) | 69615..70637 | - | 1023 | WP_064334276 | plasmid partitioning protein RepB | - |
| shn_RS30460 (shn_30460) | 70731..71930 | - | 1200 | WP_084438685 | plasmid partitioning protein RepA | - |
| shn_RS30465 (shn_30465) | 72312..72938 | + | 627 | WP_064334278 | acyl-homoserine-lactone synthase TraI | - |
| shn_RS30470 (shn_30470) | 72941..73912 | + | 972 | WP_064334279 | P-type conjugative transfer ATPase TrbB | virB11 |
| shn_RS30475 (shn_30475) | 73902..74279 | + | 378 | WP_064334280 | TrbC/VirB2 family protein | virB2 |
| shn_RS30480 (shn_30480) | 74276..74560 | + | 285 | WP_064334281 | conjugal transfer protein TrbD | virB3 |
| shn_RS30485 (shn_30485) | 74571..77027 | + | 2457 | WP_064334282 | conjugal transfer protein TrbE | virb4 |
| shn_RS30490 (shn_30490) | 76999..77802 | + | 804 | WP_064334283 | P-type conjugative transfer protein TrbJ | virB5 |
| shn_RS30495 (shn_30495) | 77799..78002 | + | 204 | WP_064334284 | entry exclusion protein TrbK | - |
| shn_RS30500 (shn_30500) | 77996..79174 | + | 1179 | WP_064334285 | P-type conjugative transfer protein TrbL | virB6 |
| shn_RS30505 (shn_30505) | 79197..79859 | + | 663 | WP_062428114 | conjugal transfer protein TrbF | virB8 |
| shn_RS30510 (shn_30510) | 79876..80688 | + | 813 | WP_064334286 | P-type conjugative transfer protein TrbG | virB9 |
| shn_RS30515 (shn_30515) | 80692..81129 | + | 438 | WP_064334287 | conjugal transfer protein TrbH | - |
| shn_RS30520 (shn_30520) | 81144..82442 | + | 1299 | WP_064334288 | IncP-type conjugal transfer protein TrbI | virB10 |
| shn_RS30525 (shn_30525) | 82659..83360 | + | 702 | WP_168168999 | autoinducer binding domain-containing protein | - |
| shn_RS30530 (shn_30530) | 83362..83682 | - | 321 | WP_084438680 | transcriptional repressor TraM | - |
| shn_RS30535 (shn_30535) | 83822..84040 | + | 219 | WP_064334290 | helix-turn-helix transcriptional regulator | - |
| shn_RS30540 (shn_30540) | 84139..84759 | + | 621 | WP_064334291 | DUF433 domain-containing protein | - |
| shn_RS30545 (shn_30545) | 84764..85141 | + | 378 | WP_064334292 | DUF5615 family PIN-like protein | - |
| shn_RS30550 (shn_30550) | 85190..85798 | - | 609 | WP_064334293 | TraH family protein | virB1 |
| shn_RS30555 (shn_30555) | 85813..86973 | - | 1161 | WP_064334294 | conjugal transfer protein TraB | - |
| shn_RS30560 (shn_30560) | 86963..87493 | - | 531 | WP_245337521 | conjugative transfer signal peptidase TraF | - |